Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01701 ATGTACGCGTCGTTCTCCGTTCCGGTCGCAGCCCTTCCTTGCCCACGCTTGCTTCAGCAGCCCCCATTGAAGCCCTCCGAATGCTTTCGAACTTCTTTCAACCGCCGCCATCTGATTACCACTCTACTCTCTGTCTTTGCCCCTTCTTTTATCGATTTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGGTTGTTTCAAATGCCCCCTGTTCGTCTTGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTTGATAGTTTTGGTATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTGTCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAGTTGAAGGAAATGGGAGCTTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAGCGAGCTTATCAAGCAGCAGAGATTATTGCTTCAGTTAATGGTGTGAATCGAAGTTACATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGGCTTGGAGCTTTTGAAGGCAAGAGATTGGATTCTTTATCAGAAGTATATGCTTCAGATACAATCTCTTCAAGTATCAAACCTCCTCCGATAGATGATGGCACCCCTAACGAGAGCGTATCTGATGTCTTCGTTCGTGTAACTCAACTGATGTCGATTCTCGAAACCCAATACTCAGGTGATACTATCATTATTGTCTCCCCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTCTAATCGGTCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCTGGGGAGGTTCGCTTCGTTGACATACGCAGCATCCCTTCTTATAAGCAACCAGCTTCAGCTACTTGTGGTTACAATTATGCTCTGAAATGGCAGTCATTACGCTTTACAGTTGTACAAGCAACGCTGCAGAGAAATCAGATTACTGCTCAACCCCCATGGCCGAACGGGATCCATTCCATTTCAGCCCTCTTCATCACTATAATCTTCTCCTTTTCCATCTCTTTGTTCATCAATGATTCAACCCCAGAAAGAATTTCTTGCCTAAAATTCAACTTCTTTGATTTTCCTTTCCCTTCTGGTTCTTCCATCGTTTTCCTATCCTCACATGGCGGCCACCCTTTAGTCATTTTTGGCATCTCCGATTTTTTTGGATATGGCTATTCGAGGTGTCGATTTCAAATGAATAATTGTGACCATCAATTGGAGAAGTTACCTGAAGAGGGACAGAAATGGGGTTTCCTTATTTGGTTGCTTTTCAGCTATTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGCGCGTAGACAAGCACACTTGTTCCGTGCCCAACAAGGCTTACCGGTATCAGAATATGGGGTACTAGTTGATATGATTAGAGTTCCTGATTGGGCGTATGAAGCTGCAGGACTAGAAACACGAGCCATTGCCCAAGATGCTACAGGGTATCATCCCGGACTGTTCTTAACCTCAGCTCAGTTGTTGGCACAAAATTCTAAGAAACGGGCGACTTTTGTGCAGCGGGAAGCTGTGGAAGCTCTCATCCAAGAACTTCCAAAGTTTAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGTCCTATTTGCCTTGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTTGAATGTATTGACGAGTGGCTTCGCCTGAATGTCAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTTGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTCACAATGCTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCGACTCCAACCCATGCAGCTCATACCGAAAACACAGCAAGTCTCCATACTGACACTGCCTTAGATGCTTTGGAAAATGGAAATTCATCCATGCCATCTGCTTCTCCTCATTGA 1980 44.95 MYASFSVPVAALPCPRLLQQPPLKPSECFRTSFNRRHLITTLLSVFAPSFIDFTLPCSSDLVAEARGLFQMPPVRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAFEGKRLDSLSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDIRSIPSYKQPASATCGYNYALKWQSLRFTVVQATLQRNQITAQPPWPNGIHSISALFITIIFSFSISLFINDSTPERISCLKFNFFDFPFPSGSSIVFLSSHGGHPLVIFGISDFFGYGYSRCRFQMNNCDHQLEKLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGLPVSEYGVLVDMIRVPDWAYEAAGLETRAIAQDATGYHPGLFLTSAQLLAQNSKKRATFVQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSHNAFVTTQPSSLSRSTPTHAAHTENTASLHTDTALDALENGNSSMPSASPH 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23884631 23892341 - MELO3C002259.2.1 Cme12g01701 344918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01701 659 ProSiteProfiles Zinc finger RING-type profile. 544 585 IPR001841 -
Cme12g01701 659 Pfam Histidine phosphatase superfamily (branch 1) 81 275 IPR013078 -
Cme12g01701 659 Pfam Ring finger domain 543 585 IPR001841 -
Cme12g01701 659 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 20 290 - -
Cme12g01701 659 CDD RING-H2_RNF111_like 543 587 - -
Cme12g01701 659 SUPERFAMILY Phosphoglycerate mutase-like 79 276 IPR029033 -
Cme12g01701 659 SMART ring_2 544 584 IPR001841 -
Cme12g01701 659 MobiDBLite consensus disorder prediction 606 637 - -
Cme12g01701 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 590 IPR013083 -
Cme12g01701 659 Gene3D - 78 285 IPR029033 -
Cme12g01701 659 SUPERFAMILY RING/U-box 526 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01701 Cme-Chr12:23884631 Cme06g02323 Cme-Chr6:30645942 1.84E-13 dispersed
Cme12g01701 Cme-Chr12:23884631 Cme02g01963 Cme-Chr2:25888628 3.32E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01701 - - csv:101222124 529.25