Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01703 ATGCCTAAGCTTGTTGGCCATGGTGGAACTTCTTCTTCTTCTGCTGAACTAGATCGAAAAACTATGGAGAAAAATAGAAGAAGTCATATGAAATCTCTCTGTTCTAACCTTTTTAATCTTGTTCCTCCCTCTCATTTCAAAATCCCTAAGGAATTGATATCACAACAAAATCAAATTTGTCATGTAATTGCGTACATAAATGAATTGAAAGAAAGAGTGGAGAATTTGGAAAAAAGGAAACAAGCTTTACGATTACAAACTCATTCTTCACATATTCACGATCAAGCCAATAACAATAATGATGTTACATTGCCTATAATTGAGATAAACGACTTAGGTAATGACATTGTTCACATAATGCTCATTAGTAGCGTCAATAGAAGCTTCATGCTCCACCAAATTATTAGTGTCATTGAAGAGGAAGGTGGCCAAGTCGTCAATGCTGGCTTATCCACAATCGGGAACAAAGTCTTTCACTCACTCCACATCGAAGCTAAGATCTCGAGAATTGGAATAGAGACTTCAAGAGTAAAACGACGATTGGTGAATTTGGTATACCAAAATCAACACTAA 573 35.95 MPKLVGHGGTSSSSAELDRKTMEKNRRSHMKSLCSNLFNLVPPSHFKIPKELISQQNQICHVIAYINELKERVENLEKRKQALRLQTHSSHIHDQANNNNDVTLPIIEINDLGNDIVHIMLISSVNRSFMLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIETSRVKRRLVNLVYQNQH 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23896846 23898161 + MELO3C002257.2.1 Cme12g01703 344920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01703 190 Coils Coil 66 86 - -
Cme12g01703 190 PANTHER OS01G0108400 PROTEIN 94 184 - -
Cme12g01703 190 PANTHER OS01G0108400 PROTEIN 15 89 - -
Cme12g01703 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 89 IPR015660 GO:0003700|GO:0006357
Cme12g01703 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 94 184 IPR015660 GO:0003700|GO:0006357
Cme12g01703 190 Gene3D - 17 96 IPR036638 GO:0046983
Cme12g01703 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 89 IPR036638 GO:0046983
Cme12g01703 190 MobiDBLite consensus disorder prediction 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01703 - - - cmo:103483440 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01342 Cme-Chr12:21409309 Cme12g01703 Cme-Chr12:23896846 1.41E-09 dispersed
Cme12g01703 Cme-Chr12:23896846 Cme01g00324 Cme-Chr1:2446369 2.39E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g729 . . . . . Bpe13g00224 Bma06g00229 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0110 . . Lsi02g00364 Csa01g00841 Chy12g01276 Cme12g01703 . . Bda11g01637 . . . . . Sed08g2498 . . . Cma18g00161 . Car18g00154 . . Bhi08g01595 Tan05g2021 Cmetu12g1885 Lac10g0437 Hepe07g2234 . . Cla01g01291 Cam01g1438 Cec01g1473 Cco01g1453 Clacu01g1358 Cmu01g1261 Cre01g1272 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010270 3 1 0 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 32