Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01704 ATGTGGGTGTTCTATGGAATGCCCTTTGTTCATCCCGATAGCCTTCTCGTCATTACTATCAATAGTATCGGTTTCTTCATCGAACTCATCTACGTTTCCATCTTCTTTCTCTACTCTCCATGGGCCAAGAAAAAGAAGATGTTGATCATTTTGCTCATCGAAACTATTTTCTTCGCTGTTGTCGTCGTTATTACGCTTCTGGTTTTCCATACCACCATAACTAGAAGTTACTTTGTTGGCATTTTATGTATCATCTTCAACATTGGAATGTATACTTCTCCATTGACTGTCATGCGACTAGTCATCAAAACAAGGAGTGTGAAATACATGCCATTTACTCTCTCCCTCGCCAACTTCTGCAACGGTATTGTATGGGCCATTTACGCTCTTCTCAAATTCGATCCTAACGTCTTGATTCCAAATAGTTTGGGAGCACTTTCTGGGTTGATACAATTGATTCTGTATGCAACTTATTATAGAACTACAAATTGGGACAGTGACGGGTCGACGAGGCCGAGGAGGCCTGAGGTGCAAATGACAGATAATGTATAG 552 40.94 MWVFYGMPFVHPDSLLVITINSIGFFIELIYVSIFFLYSPWAKKKKMLIILLIETIFFAVVVVITLLVFHTTITRSYFVGILCIIFNIGMYTSPLTVMRLVIKTRSVKYMPFTLSLANFCNGIVWAIYALLKFDPNVLIPNSLGALSGLIQLILYATYYRTTNWDSDGSTRPRRPEVQMTDNV 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23901102 23902341 - MELO3C002256.2.1 Cme12g01704 344921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01704 183 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET5 1 179 - -
Cme12g01704 183 Pfam Sugar efflux transporter for intercellular exchange 1 40 IPR004316 GO:0016021
Cme12g01704 183 Pfam Sugar efflux transporter for intercellular exchange 78 161 IPR004316 GO:0016021
Cme12g01704 183 PANTHER RAG1-ACTIVATING PROTEIN 1 1 179 - -
Cme12g01704 183 Gene3D - 72 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01704 K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter) - csv:101222361 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01849 Cme-Chr9:22725135 Cme12g01704 Cme-Chr12:23901102 2.48E-60 dispersed
Cme12g01704 Cme-Chr12:23901102 Cme03g00418 Cme-Chr3:5750612 1.29E-34 dispersed
Cme07g00493 Cme-Chr7:4045495 Cme12g01704 Cme-Chr12:23901102 1.45E-07 transposed
Cme12g01704 Cme-Chr12:23901102 Cme04g01897 Cme-Chr4:26655414 1.80E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g725 . . Bda06g00588 . Bpe12g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00363 Csa01g00840 Chy12g01278 Cme12g01704 Blo13g00054 Blo15g00273 . . Bpe07g00830 . . . . . . . Cma18g00160 . . . . . . . . . . . Cla01g01289 Cam01g1439 Cec01g1477 Cco01g1451 Clacu01g1356 . Cre01g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000285 7 4 5 3 5 3 1 9 9 2 8 7 3 3 3 2 7 0 4 6 3 2 8 6 9 5 7 8 5 3 147