Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01714 GGGAAATGTTGTGTTGTGTTGTTTCATTTCATTCACTTTTCGCCTCTTATTTCTGAATTTCAGGAGAAATTGAAAAACCCATTTCTCCCCTTTCATAAACCCTCAATTTCTCCCTTTCAAATTTCATCCGGAATGGGAGAAATCAAACGTAAAAGAGGCCGAAAAGCCAAGGATTCCAAGCCGGAGGCTCTAGATTTTCCTCCGCCCACCACCGCTACTGCCACCGTCGCCATGGATGACGTTTTTTCAGTCAGCAACGTCGAGCTTATGGAACCCGCATCCACTTCTAAACACCACCAGAACCGCCGTGGGAGACCCAAGAAGCTTTCCAAGCATGTCGAGAATCCCGACAAGTTCCCGCAATTGTCTCCGTCTAGACGTGGCCCTCGCGCTGTCGAAAATGGCGAATTTGCAGCTTCCGGCGATGCCTTGCCGTCTTCCATCGTTTCGGAAAGGGTGCAACCGGAATGGCCGGGCATGGCGAGAGTCGTGCCGGCGATGGACGCTGTGGTTAAGGTGTTTTGTGTCCACACGGAGCCGAATTTCTCTCTTCCTTGGCAGAGAAAGAGGCAATATAGTTCGAGTAGTAGTGGATTTGTGATTGGTGGAAGGAGGGTTCTCACGAATGCGCATTCCGTCGAGCATTATACCCAGGTTAAGCTTAAGAAGCGTGGTTCAGATACGAAGTACTTGGCGACCGTACTTGCAATCGGGACTGAATGCGATATCGTCTGTCGTCAACTTAAAGCATTAAGTATTATGATGTATGATGATGCAGCAATGCTTACGGTTGATGACGATGAGTTTTGGGTGGGAGTTTCACCGGTAGAATTTGGGGAGTTACCTGCACTGCAAGATGCAGTAACTGTTGTTGGTTATCCAATTGGAGGTGATACAATTTCTGTCACAAGTGGGGTTGTATCGCGGATAGAAATCCTTTCTTATGTGCACGGGTCTACCGAGCTTCTTGGTCTACAGATAGATGCTGCTATAAACTCTGGTAATTCTGGTGGGCCTGCCTTTAATGATAAAGGCAACTGTGTAGGTATTGCCTTTCAGTCACTCAAGCATGAAGATGCAGAAAACATAGGTTATGTCATACCAACACCAGTTATCTTGCATTTTATACGGGATTACGAGAAGAATGGAGCATACACAGGCTTTCCAATTCTTGGTCTTGAGTGGCAGAAAATGGAAAATCCTGATCTTCGTGAGGCTATGGGTATGAAGCAAGATCAGAAAGGCGTCCGTATTAGGCGTATTGATCCTACCGGGCCAGAATCCAAAGTTTTGAAGCCAGCAGATATTATTCTCAGCTTTGATGGGGTCGATATTGCAAATGATGGAACAGTTCCTTTCAGGCATGGTGAGCGTATAGGATTTAGTTACCTTGTCTCTCAGAAATATACTGGTGATAGTGCAGCAATAAAAGTTCTGCGCAACTCTGAGACACTTAGTTTTAACTACCAGCTTGCAACTTACAGAAGACTCATTCCTGCCCACAATGAAGGCAGACCCCCTTCTTATTACATCGTAGCAGGATTTGTTTTTTCCACTGTATCCGTTCCTTATCTCCGCTCTGAGAATTTGAGAAGAATTTCTCACCCCAGAAAAGAGGTTGCAAATGGCCTCTTCAATTGGAGAGGATTGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAACTCTTGGACAAACTATTGCATTCAATGCCCCAATCACCAGATGAGCAGCTAGTGGTGGTTTCTCAGGTACTTGTGGCTGATATCAATATTGGATATGAAGACATCGTTAACACCCAGGTCCTTGCTTTCAATGGTAAACCTGTGAAGAACCTCAAGAGCTTGGCTAACATGGTTGAAAGTTGTGACGATGAATTTTTGAAGTTTGATTTAGAATATCAACAGATAGTTGTCCTCCGCACAAGTACGGCCAAAGCAGCCACTTCAGATATTCTGGCCACACATTGCATACCCTCAGCTATGTCTAACGATCTCAAGACCTAA 2007 45.19 GKCCVVLFHFIHFSPLISEFQEKLKNPFLPFHKPSISPFQISSGMGEIKRKRGRKAKDSKPEALDFPPPTTATATVAMDDVFSVSNVELMEPASTSKHHQNRRGRPKKLSKHVENPDKFPQLSPSRRGPRAVENGEFAASGDALPSSIVSERVQPEWPGMARVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIVCRQLKALSIMMYDDAAMLTVDDDEFWVGVSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVILHFIRDYEKNGAYTGFPILGLEWQKMENPDLREAMGMKQDQKGVRIRRIDPTGPESKVLKPADIILSFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAIKVLRNSETLSFNYQLATYRRLIPAHNEGRPPSYYIVAGFVFSTVSVPYLRSENLRRISHPRKEVANGLFNWRGLYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVVLRTSTAKAATSDILATHCIPSAMSNDLKT 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23941236 23947338 - MELO3C002245.2.1 Cme12g01714 344931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01714 668 MobiDBLite consensus disorder prediction 44 70 - -
Cme12g01714 668 PANTHER - 49 668 - -
Cme12g01714 668 Pfam Trypsin-like peptidase domain 197 350 - -
Cme12g01714 668 CDD PDZ_serine_protease 389 486 - -
Cme12g01714 668 Pfam PDZ domain 409 488 IPR001478 GO:0005515
Cme12g01714 668 MobiDBLite consensus disorder prediction 91 132 - -
Cme12g01714 668 Gene3D - 388 496 IPR036034 GO:0005515
Cme12g01714 668 Gene3D - 271 381 IPR043504 -
Cme12g01714 668 Gene3D - 152 251 IPR043504 -
Cme12g01714 668 SUPERFAMILY Trypsin-like serine proteases 166 383 IPR009003 -
Cme12g01714 668 PANTHER PROTEASE DO-LIKE 9 49 668 - -
Cme12g01714 668 SUPERFAMILY PDZ domain-like 414 495 IPR036034 GO:0005515
Cme12g01714 668 Gene3D - 497 668 IPR046449 -
Cme12g01714 668 PRINTS HtrA/DegQ protease family signature 321 338 IPR001940 GO:0004252|GO:0006508
Cme12g01714 668 PRINTS HtrA/DegQ protease family signature 198 210 IPR001940 GO:0004252|GO:0006508
Cme12g01714 668 PRINTS HtrA/DegQ protease family signature 430 442 IPR001940 GO:0004252|GO:0006508
Cme12g01714 668 PRINTS HtrA/DegQ protease family signature 284 308 IPR001940 GO:0004252|GO:0006508
Cme12g01714 668 MobiDBLite consensus disorder prediction 47 62 - -
Cme12g01714 668 Pfam PDZ domain 552 665 IPR041517 -
Cme12g01714 668 Pfam PDZ domain 498 529 IPR041517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01714 K25897 DEGP9; protease Do-like 9 [EC:3.4.21.-] - csv:101219688 1129.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02165 Cme-Chr1:30464707 Cme12g01714 Cme-Chr12:23941236 9.43E-166 dispersed
Cme05g01199 Cme-Chr5:19234014 Cme12g01714 Cme-Chr12:23941236 1.21E-118 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42