Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01717 ATGGCTTTCCCTTTACCTTTCCCTTTACTTTTCCTGATGATCATTACCACCATCCTTCCTTTCCCATCTCTTGTTCATTCCAAACTCTCCCTCGGTTATTACCAAAAAACATGTCCCGACTTCGAGAAGATTGTTCGTGAAACTGTCACCAATAAACAAATAACCAGTCCTGTTACTGCTGCAGGAACCCTTCGCCTCTTCTTCCATGATTGCATGGTTGATGGTTGTGATGCCTCCGTTCTCATTTCCTCCAACTCCTTCAACCAAGCTGAGCGTGAGGCTGAAATCAACCACTCCCTTTCTGGTGACGCCTTCGATGTCGTCGTCCATGCTAAGACCAACCTCGAACTCGCATGTCCTGGCATTGTTTCTTGTTCCGACATCTTGGCTCAGGCGACTCGAGATCTAGTAGTGATGGTGGGAGGACCATTCTACAACGTTCGATTGGGGAGAAAAGACGGAATGATATCAAAAGCAGGCAATGTGGAAGGGAACCTCCCAAGAGTGAACTTCACAATGGACAAACTCGTCGAATACTTCACCCAAAGAGGCTTCACAGTCCAAGAACTCGTCGCCCTCTCCGGAGGTCACACCATCGGTTTCTCCCACTGCAAGGAATTCACAGACCGACTCTTCAACTATAGTGCCACGTCACCCACCGACCCGGACATATACCCCAAATTCGCCGAAAAGCTCAAGGCCATGTGTGCCAATTTCCAAAAGGACACCGCCATGTCAGCATTCAACGACGTCATAACACCTGGCAAATTCGACAACATGTTCTACCAGAACCTGCCACGTGGCCTAGGCCTACTCGCGACTGACCACGCCCTCGTTAAGGATCCGAGGACAAAGCCGTTTGTCGATCTTTACGCCGTGAACCAAACGGCGTTTTTTAACGACTTTGCTCGTGCTATGGAGAAGCTCAGTGTTCACGGCGTTAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTTTTTAATTCCATTAACTCATGA 1005 49.05 MAFPLPFPLLFLMIITTILPFPSLVHSKLSLGYYQKTCPDFEKIVRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASVLISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMISKAGNVEGNLPRVNFTMDKLVEYFTQRGFTVQELVALSGGHTIGFSHCKEFTDRLFNYSATSPTDPDIYPKFAEKLKAMCANFQKDTAMSAFNDVITPGKFDNMFYQNLPRGLGLLATDHALVKDPRTKPFVDLYAVNQTAFFNDFARAMEKLSVHGVKTGRKGEVRRRCDLFNSINS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23962345 23963944 + MELO3C002242.2.1 Cme12g01717 344934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01717 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 Gene3D - 32 330 - -
Cme12g01717 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cme12g01717 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cme12g01717 334 PANTHER - 10 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PANTHER PEROXIDASE 41 10 333 - -
Cme12g01717 334 Gene3D Peroxidase, domain 2 167 309 - -
Cme12g01717 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 Pfam Peroxidase 46 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme12g01717 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00146 Cme-Chr7:928884 Cme12g01717 Cme-Chr12:23962345 2.37E-74 transposed
Cme08g00634 Cme-Chr8:4094550 Cme12g01717 Cme-Chr12:23962345 4.28E-97 transposed
Cme08g02562 Cme-Chr8:32919372 Cme12g01717 Cme-Chr12:23962345 6.99E-68 transposed
Cme11g00354 Cme-Chr11:3632127 Cme12g01717 Cme-Chr12:23962345 1.22E-97 transposed
Cme12g01310 Cme-Chr12:21171442 Cme12g01717 Cme-Chr12:23962345 8.54E-31 transposed
Cme12g01717 Cme-Chr12:23962345 Cme02g01940 Cme-Chr2:25736686 2.49E-159 wgd
Cme12g01717 Cme-Chr12:23962345 Cme04g01925 Cme-Chr4:26977901 1.63E-143 wgd
Cme12g01717 Cme-Chr12:23962345 Cme09g00334 Cme-Chr9:2836544 3.28E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01717 K00430 - csv:101220163 628.632