Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01722 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTCTTCTTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCCAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCGAAATCATCTTCATCGTCGTTAAAAGCTGACAATAGAAGGGAGAAGTCGTTGGCGCTCCTGACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGACGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATACGACATTGCCAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACAGACACGAGAAAGCCTGCATTTAGGTGGTTGGGAGTGAGGGGCAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAGTTCCGCCTATCAGGGTTTTAGTCATTCCCTCAACATCCAAAAGCTAGTGCAGTGCGAGAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGATTGGGAAAGTCTTTCCTCAACATTTCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1146 43.19 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAESSAYQGFSHSLNIQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24006819 24009966 - MELO3C002236.2.1 Cme12g01722 344939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01722 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 373 - -
Cme12g01722 381 Gene3D - 150 237 IPR036388 -
Cme12g01722 381 Gene3D - 18 91 IPR036388 -
Cme12g01722 381 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 MobiDBLite consensus disorder prediction 131 149 - -
Cme12g01722 381 MobiDBLite consensus disorder prediction 106 153 - -
Cme12g01722 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 PANTHER TRANSCRIPTION FACTOR E2F 7 373 IPR015633 GO:0000978|GO:0006357
Cme12g01722 381 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
Cme12g01722 381 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01161 Cme-Chr8:8203952 Cme12g01722 Cme-Chr12:24006819 1.15E-06 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme12g01722 Cme-Chr12:24006819 7.89E-11 transposed
Cme07g00919 Cme-Chr7:9623975 Cme12g01722 Cme-Chr12:24006819 2.10E-17 transposed
Cme12g01722 Cme-Chr12:24006819 Cme02g01934 Cme-Chr2:25687566 1.81E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42363 PF02319 E2F_TDP 2.30E-20 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01722 K09391 - csv:101219210 714.146