Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01722 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTCTTCTTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGTAACGATTATGCCAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCAACTGCAGCTGTGCCGAAATCATCTTCATCGTCGTTAAAAGCTGACAATAGAAGGGAGAAGTCGTTGGCGCTCCTGACACAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGACGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATACGACATTGCCAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACAGACACGAGAAAGCCTGCATTTAGGTGGTTGGGAGTGAGGGGCAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAGTTCCGCCTATCAGGGTTTTAGTCATTCCCTCAACATCCAAAAGCTAGTGCAGTGCGAGAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGATTGGGAAAGTCTTTCCTCAACATTTCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1146 43.19 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAESSAYQGFSHSLNIQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24006819 24009966 - MELO3C002236.2.1 Cme12g01722 344939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01722 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 373 - -
Cme12g01722 381 Gene3D - 150 237 IPR036388 -
Cme12g01722 381 Gene3D - 18 91 IPR036388 -
Cme12g01722 381 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 MobiDBLite consensus disorder prediction 131 149 - -
Cme12g01722 381 MobiDBLite consensus disorder prediction 106 153 - -
Cme12g01722 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Cme12g01722 381 PANTHER TRANSCRIPTION FACTOR E2F 7 373 IPR015633 GO:0000978|GO:0006357
Cme12g01722 381 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
Cme12g01722 381 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01722 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01161 Cme-Chr8:8203952 Cme12g01722 Cme-Chr12:24006819 1.15E-06 dispersed
Cme05g00246 Cme-Chr5:1809326 Cme12g01722 Cme-Chr12:24006819 7.89E-11 transposed
Cme07g00919 Cme-Chr7:9623975 Cme12g01722 Cme-Chr12:24006819 2.10E-17 transposed
Cme12g01722 Cme-Chr12:24006819 Cme02g01934 Cme-Chr2:25687566 1.81E-132 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42363 PF02319 E2F_TDP 2.30E-20 CL0123 Cme TF