Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01723 AACTTGTTTTGTTTGGGCAGAGAGAAAATAGGAGGGAAAATCAAGGGGAAGAGGGAAAAAGATGTTTCAATCAGCTGCAAACGGAACACTATTTTCGATATGTTTCAAAGAAACATCAACCGAAGAGTAACCAAGACGAAGACGAAGACTGTTTTTCTCCATCTTTGCCCACCAATACATAGCTTCTTCCTCTCATATCGCAACTTCACTGCCCAATCTACATCCGCCCTAGACACCGCCGCCGCCGCTGCGGATATCGCCACTCTTGTTCTCGAGTCCGACCCCAAAAGCTTGAGGGGATCCCTCCATGGATTACCACTTCAATTTACCCCTGAACTTGTCGACAAGGTTCTCAAACGCCTATGGTTCCACGGACCGAAAGCGCTACAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCTTCATCTTCCTTCGACCACGCCATCGACATTGCAGGTCGTATGCGTGACTACAAGACCGTATGGGCTCTAGTAGCTCGAATGCGAGCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCTGAGAGGTTCGTAGGCGCGGGAAAACCAGATAGAGCGATCAGGGTTTTCTTGTCGATGCGGGAGCATGGGTGTCCTCAGGATCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTATAACCATCTGTTCAAGGTTTTGAGAGGAAAATTTAAGGCTGACGTTGTTAGTTATAACATAATTGCAAATGGATGGTGTTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATACTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAAAGAGGGAAGTTGAAATTGATGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTGGGTGAAATAAAAAGGGCTCGAAAGGTTTTCAATGAAATGGTTGGTGAAGGGATTCTTCCTTCAACAGCAACTTACAATGCTATGATACAGGTTCTGTGTAAGAAAGATAGTGTGGAGAATGCAGTATTGATGTTTGAGGAGATGATAAAGAAGGGTTATGTGCCGAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTTTCATGCAGGGAATATGGATAGGGCTATGGAGTTTATTGAGAGAATGAAAACTGATGGGTGTGAACCAAATGTTCAGACATATAACGTTGCCATTCGATACTTTTGTGATGCTGGTGACGTTGAAAAGGGGTTGAGTATGTTTGAGAAGATGGGGCAGGGGAGTTTACCAAATTTGGATACGTATAATATTTTGATTAGTGCAATGTTTGTGAGGAAGAAGTCTGAAGATTTAGTGGTTGCTGGGAAGCTGTTGCTTGAGATGATTGATAGAGGATTCATTCCTAGGAAGTTCACTTTCAATCGGGTTCTCAACGGGCTTTTGCTGACGGGTAATCAAGCTTTTGCAAAGGAGATTTTGAGACAGCAGAGCAAATGTGGCCGTCTTCCTCGCCAATTTAAGTTATGA 1608 42.66 NLFCLGREKIGGKIKGKREKDVSISCKRNTIFDMFQRNINRRVTKTKTKTVFLHLCPPIHSFFLSYRNFTAQSTSALDTAAAAADIATLVLESDPKSLRGSLHGLPLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVGAGKPDRAIRVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNHLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQIKEAWEFFLQMKKREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMIKKGYVPNLTTYNVVIRGLFHAGNMDRAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNLDTYNILISAMFVRKKSEDLVVAGKLLLEMIDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRQQSKCGRLPRQFKL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24012290 24015393 - MELO3C002235.2.1 Cme12g01723 344940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01723 535 Pfam PPR repeat family 283 330 IPR002885 -
Cme12g01723 535 Pfam PPR repeat family 353 401 IPR002885 -
Cme12g01723 535 Pfam PPR repeat family 427 469 IPR002885 -
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Cme12g01723 535 Gene3D Tetratricopeptide repeat domain 238 331 IPR011990 GO:0005515
Cme12g01723 535 Gene3D Tetratricopeptide repeat domain 124 237 IPR011990 GO:0005515
Cme12g01723 535 SUPERFAMILY HCP-like 194 386 - -
Cme12g01723 535 Pfam PPR repeat 217 236 IPR002885 -
Cme12g01723 535 Pfam PPR repeat 251 281 IPR002885 -
Cme12g01723 535 Pfam PPR repeat 193 211 IPR002885 -
Cme12g01723 535 Gene3D Tetratricopeptide repeat domain 453 526 IPR011990 GO:0005515
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Cme12g01723 535 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 68 535 - -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 182 214 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 427 451 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Cme12g01723 535 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Cme12g01723 535 Gene3D Tetratricopeptide repeat domain 332 452 IPR011990 GO:0005515
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Cme12g01723 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Cme12g01723 535 PANTHER OS02G0679200 PROTEIN 68 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01723 - - - csv:101218969 931.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01934 Cme12g01723 CCT
Cme02g01814 Cme12g01723 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01723 Cme-Chr12:24012290 Cme08g02385 Cme-Chr8:30742457 3.76E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014283 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 22