Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01728 AAGCGAGGGGGGGAAACAGAACAAACCTCCCCCCTTATTCTTCTTTCTCTTTTCTTTCTTCCTTCTTTCCTTCCTCACAACCCCGACCAAGACAAAGAAATACTCCACGCTTCACTCATAATGGAAGACTCTGAGAAATTGACTGCCTTGAAGAAGGCTTATGCTGATATAATCCTGAATACGGCGAAGGAGGCCGCGGCGCGTATTATGGTTTCTGAGAGGAACGCTATTCGGTGTCAGCAGGAGCTCTCCACTACTAAAGATGAGGCGTTCCGGATACTGCTTAGGCTTAAGCAAATGTTGGATTCTAAGGTCAGTGAGGCAGAGATGGTTTCTTTAAATCAAAAGAAAAAGATCGAAGAGCTTGAAGCTCAGCTTGAGGAAGCTGAGGACATAGTGAGGGAACTTAGAGTTCAGTTGCAGGAAGTTCAAGATGAATTGGAACACGTGAGAAACAAAAATGTAGAGCCCCAAGATAAGCAAAACTTGGCCAGTAACATTGCATCTCGAGAGGATTTTCCAAACTCACATGAGAAGATCGCACCTTATGACATAAGTTCAACTTTAAATGGTACATGCCTTGACAGTTGGCCTGAAAGTAAGAATGACTCGCAGACGGATAAAGCCCAAGTTCATAGGGATTTTGCCTCTATGGTGATGAGAAGCAAAGAACCTGAGCTTTACAGAAATGGCTGCACTCAGAGAGTACGTGCATTTGAAAGAAAATCGTTTGATGGAGAAGTATGTCTGACTGGACAAGCTGAAGATGTCAAGAGTAAGGTGTGCAATATGGGTGAAGAAGAGGGTAAACTGATGCGTAAAACAAACACTACCAAGGCTGATAATATCAGTGGAGAAAGGAAAAATTTTAATGAGATCAAGGCATTGCCTAAGCTATTAAGCGGGGATACTCAAGTACCAATTCTTAAATCCCTCCGTCGAAAAAGAAAACGGGCTACTAGATACAACAAGAAGAAAGCTTTAACTGTTCTTGATGACATACCTAAACAATGCAAGTCACCTGATCTTCACTGCTCAGAAAGTCTTTCGGTGGATAACGACGATGCTGGGAATTTTTTGTCGAAAAAGGAAATTGATAGTCAGAATGGTTTAATTTTGCTTTCAACCCCATTGCTGTCTGAAATTAATGAAATGCCAACACCTTCAGGATGTCCCGACGCCAGTGAGGGAGATGGAGCAGTAATAAATGATTGTCCTCTTAGGAACATGACAGACCATGATACAGCAGTTGTAGGTAAATCTGACTTCGCTAGCCAGGAAAGTTTATGTGGGGAAAATTTGGAGGCTTCTACTGATAAAGTTGACCTTGACCCGGTTAAGGAGTCATCAATTCAATTGGATATGAAAAACTCTGATGTGATTGATGAGATTCCTAGTCAACAGTCAAATAATAAAGTTCTCAAGTATACATTCCAAAGAAAGCGAAAGAAGGAATCTTTGAGCAGCCCTGATGGTAAATCATCAGTTGATGAAAGCATATCAAAGAAAAGGATGAAGGATAAACAAAGTGTATCGTCAGAATCAGACAAGTTTAGCTTAATGACAGAATCATCTCGAGACAACCGTCGGTTGGCACAGGTTGCTCGGCAGCTCATATCTTTGTCTGAGAAGAAGTGGCGGTAG 1644 41.85 KRGGETEQTSPLILLSLFFLPSFLPHNPDQDKEILHASLIMEDSEKLTALKKAYADIILNTAKEAAARIMVSERNAIRCQQELSTTKDEAFRILLRLKQMLDSKVSEAEMVSLNQKKKIEELEAQLEEAEDIVRELRVQLQEVQDELEHVRNKNVEPQDKQNLASNIASREDFPNSHEKIAPYDISSTLNGTCLDSWPESKNDSQTDKAQVHRDFASMVMRSKEPELYRNGCTQRVRAFERKSFDGEVCLTGQAEDVKSKVCNMGEEEGKLMRKTNTTKADNISGERKNFNEIKALPKLLSGDTQVPILKSLRRKRKRATRYNKKKALTVLDDIPKQCKSPDLHCSESLSVDNDDAGNFLSKKEIDSQNGLILLSTPLLSEINEMPTPSGCPDASEGDGAVINDCPLRNMTDHDTAVVGKSDFASQESLCGENLEASTDKVDLDPVKESSIQLDMKNSDVIDEIPSQQSNNKVLKYTFQRKRKKESLSSPDGKSSVDESISKKRMKDKQSVSSESDKFSLMTESSRDNRRLAQVARQLISLSEKKWR 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24033989 24038282 - MELO3C002230.2.1 Cme12g01728 344945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01728 547 Coils Coil 105 153 - -
Cme12g01728 547 PANTHER - 41 547 - -
Cme12g01728 547 MobiDBLite consensus disorder prediction 480 529 - -
Cme12g01728 547 MobiDBLite consensus disorder prediction 480 513 - -
Cme12g01728 547 PANTHER OS02G0580700 PROTEIN 41 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01728 - - - cmo:103483170 958.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01728 Cme-Chr12:24033989 Cme09g00309 Cme-Chr9:2546823 3.12E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g670 . . Bda06g00570 . Bpe12g00572 . . Bma12g01020 Cmo13g00939 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0132 . . . . Chy12g01303 Cme12g01728 . Blo15g00285 . . . . . . . . . Cma13g00912 Cma18g00142 Car13g00752 Car18g00136 Cpe09g01049 . . . . . . . . Cla01g01402 Cam01g1464 Cec01g1507 . Clacu01g1490 Cmu01g1384 Cre01g1300 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005076 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39