Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01744 | ATGGGAGAAAAACCAGAAGTGCTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAAAGGCTGAAGATTTTTGGCCACAATAAGCTTGAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGTTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAACCCCCGGATTGGCAAGATTTTGTTGGTATCATCACCCTGCTTATCATTAACTCTACAATCAGTTTTATTGAGGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGGGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCCGATGCTCGTCTTCTGGATGGGGATCCACTAAAAATTGACCAGTCTGCGCTTACAGGCGAATCTCTTCCAGTAACGAAAGGACCTGGTGATGGTGTGTACTCCGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGTCTTGACAGCGATAGGGAATTTCTGCATATGTTCCATTGCTTTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGAGAGTATCGTCCTGGAATTGATAACCTCCTTGTGCTATTGATTGGAGGAATTCCTATTGCCATGCCTACAGTTCTATCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAACAGGGTGCCATCACGAAGAGGATGACGGCTATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGATAAGACGGGAACCCTGACTTTGAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTTGGCAAAGGTATAGATGCAGACACTGTTGTTCTAATGGCTGCTCGTGCATCAAGAATTGAGAATCAAGATGCTATTGATACTGCCATTGTTGGGATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATTGACCACGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCCGAACAGATTCTAAATCTTGCATACAACAAGTCAGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCGCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAAAGTCCTGGAGGTCCCTGGCAATTCATGGGCCTCTTGCCTCTGTTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGGAGAGCTTTAAATCTTGGAGTAAACGTGAAAATGATTACTGGAGATCAGCTGGCTATAGGCAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCGTCTTCTGCTTTGCTAGGACAGGAAAAGGATGAGTCAATTGCTGCTTTACCTGTTGACGACCTTATCGAGAAAGCAGATGGTTTTGCGGGTGTATTCCCAGAGCACAAGTATGAGATTGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGTATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCCGCTCGAAGTGCTTCTGATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTCTTGACTAGTAGAGCAATATTTCAGAGAATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAGGACAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACCACTGGCGTTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCGTATAAAACCAACTTTTTCCCTCGAATCTTTGGAGTACCAACCCTTGAAAAAACAGCTCATGATGATTTCCGGAAGCTAGCCTCAGCTATATATCTACAAGTGAGCACTATCAGCCAGGCTCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTATGTCGAGCGTCCTGGGTTATTTCTTGTAGTGGCTTTTGTTCTTGCTCAACTGGTTGCCACACTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCATTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTTGGTAAGGAACAACGTGAGCTGCAATGGGCTCACGCCCAAAGAACGCTGCATGGTTTGCAACCGCCTGATACCAAGATGTTCACTGAGAGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGAGAACTCCATACACTGAAAGGCCATGTAGAGTCGGTGGTGAGATTGAAGGGTCTCGATATCGAAACGATCCAACAAGCATACACCGTGTAA | 2871 | 43.54 | MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFGKGIDADTVVLMAARASRIENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPEGRKESPGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWASYKTNFFPRIFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFVLAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV | 956 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 24163351 | 24169167 | + | MELO3C002213.2.1 | Cme12g01744 | 344961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01744 | 956 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Cme12g01744 | 956 | Gene3D | - | 343 | 490 | IPR023299 | GO:0000166 | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 331 | 345 | - | - | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 496 | - | - | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 507 | 517 | - | - | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 590 | 609 | - | - | |
Cme12g01744 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 613 | 625 | - | - | |
Cme12g01744 | 956 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 103 | 349 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 565 | 678 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | CDD | P-type_ATPase_H | 36 | 847 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cme12g01744 | 956 | Gene3D | - | 328 | 627 | IPR023214 | - | |
Cme12g01744 | 956 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 936 | - | - | |
Cme12g01744 | 956 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 36 | 812 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cme12g01744 | 956 | SUPERFAMILY | HAD-like | 327 | 637 | IPR036412 | - | |
Cme12g01744 | 956 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 936 | - | - | |
Cme12g01744 | 956 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Cme12g01744 | 956 | Gene3D | - | 134 | 218 | - | - | |
Cme12g01744 | 956 | SFLD | p-type atpase | 313 | 641 | IPR044492 | - | |
Cme12g01744 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 447 | 465 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 562 | 578 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 606 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 621 | 646 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 766 | 787 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cme12g01744 | 956 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 231 | IPR008250 | - | |
Cme12g01744 | 956 | Pfam | haloacid dehalogenase-like hydrolase | 327 | 604 | - | - | |
Cme12g01744 | 956 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 853 | IPR023298 | - | |
Cme12g01744 | 956 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 333 | 339 | IPR018303 | - | |
Cme12g01744 | 956 | Gene3D | - | 96 | 821 | - | - | |
Cme12g01744 | 956 | SFLD | Haloacid Dehalogenase | 313 | 641 | - | - | |
Cme12g01744 | 956 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
Cme12g01744 | 956 | Gene3D | - | 905 | 956 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01909 | Cme12g01744 | CCT | |
Cme02g01909 | Cme12g01744 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00743 | Cme-Chr4:8629215 | Cme12g01744 | Cme-Chr12:24163351 | 4.00E-27 | dispersed | |
Cme05g01855 | Cme-Chr5:27319766 | Cme12g01744 | Cme-Chr12:24163351 | 0 | dispersed | |
Cme07g02040 | Cme-Chr7:25358546 | Cme12g01744 | Cme-Chr12:24163351 | 0 | dispersed | |
Cme12g01744 | Cme-Chr12:24163351 | Cme02g01909 | Cme-Chr2:25521866 | 0 | wgd | |
Cme12g01744 | Cme-Chr12:24163351 | Cme09g00295 | Cme-Chr9:2330877 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01744 | K01535 | - | csv:101214920 | 1796.94 |