Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01748 ATGGCGGGCCGGAGAGTCTACGGCGGCGACGACGGTGGTAGTATAAGTGGTGGTTCTTCTAATCATAGTGTTTTACTTCAGAATTGTGGTGGGTCTTTTGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCTTCTTCTTCTTCCTCCCCTTCTCTGCTTGATTGTTCTGGTGTAGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAACGGATCGAATAGATCGTTCTTTTGCCCGTTAGATAGTGAAGATAATGGGGATGAAGACTTGGATGATTACTTCCATCACCCTGAAAAAAAGAGGCGTTTAACCGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTCGAGCCAGAAAGGAAAGTTCAATTAGCAAAGGACCTTGGTCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCTCGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTATGAAAACCTACTCAAGGAGAAGGATTCACTAAAAGCTGAGATTCTTCTCCTGACAGACAAACTGCTACACAAAGAAAAAGAAAGAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAATTACCACACAATCTGGTTGCTGATTCAAATTTGGAGGATGAAGTTTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGACATCAGTTCAGTCAAAAGTGATTTATGTGATTCAGATAGCCCACACTATACTGATGGGGTTCATTCTTCACTCCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCTGATCAGTCCGACTTATCGCAAGACGAAGAAGATAACTTGGGAAGGAATCTATTGCCCCCTTATATCTTCCCAAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACGAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 1017 43.95 MAGRRVYGGDDGGSISGGSSNHSVLLQNCGGSFASEPLNALFLSGSSSSSSPSLLDCSGVGSRSMMSFEDIRGGNGSNRSFFCPLDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEILLLTDKLLHKEKERGNSVLSEVDKFGEELPHNLVADSNLEDEVSKSSKLGCKQEDISSVKSDLCDSDSPHYTDGVHSSLLEPGDSSYIFDPDQSDLSQDEEDNLGRNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24189271 24191582 - MELO3C002209.2.1 Cme12g01748 344965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01748 338 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Cme12g01748 338 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Cme12g01748 338 CDD homeodomain 104 160 IPR001356 GO:0003677
Cme12g01748 338 Pfam Homeobox associated leucine zipper 159 200 IPR003106 GO:0006355|GO:0043565
Cme12g01748 338 SUPERFAMILY Homeodomain-like 89 161 IPR009057 -
Cme12g01748 338 Pfam Homeodomain 104 157 IPR001356 GO:0003677
Cme12g01748 338 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Cme12g01748 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 23 336 IPR045224 GO:0003700
Cme12g01748 338 Coils Coil 172 199 - -
Cme12g01748 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 23 336 - -
Cme12g01748 338 Gene3D - 99 166 - -
Cme12g01748 338 SMART HOX_1 102 163 IPR001356 GO:0003677
Cme12g01748 338 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01748 - - - csv:101215160 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01900 Cme-Chr4:26702265 Cme12g01748 Cme-Chr12:24189271 2.43E-46 dispersed
Cme06g00065 Cme-Chr6:434165 Cme12g01748 Cme-Chr12:24189271 1.58E-28 dispersed
Cme08g00748 Cme-Chr8:4996358 Cme12g01748 Cme-Chr12:24189271 2.80E-40 dispersed
Cme09g00366 Cme-Chr9:3134032 Cme12g01748 Cme-Chr12:24189271 2.81E-43 dispersed
Cme10g00433 Cme-Chr10:2749165 Cme12g01748 Cme-Chr12:24189271 5.26E-36 dispersed
Cme10g00452 Cme-Chr10:2880706 Cme12g01748 Cme-Chr12:24189271 3.94E-35 wgd
Cme12g01748 Cme-Chr12:24189271 Cme09g00288 Cme-Chr9:2286250 1.67E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42365 PF00046 Homeodomain 1.00E-16 CL0123 Cme TF