Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01753 ATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACTGATAATAAAACATTAGATGGGCGCGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTCAGGAATATAATCATTCATAATCTTCACATTCATGACATCAAGGCTGGCAATGGAGGCTTTATAAGAGATTCGGTGAGCCACTATGGATACCGAACACAGAGCGATGGTGATGGAATCTCAATGTTCGGATCCTCGAGGGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTAATAGATGCAGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCACCATAACGATGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGCCGATGGGGATTTATTCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATCGGCGGCAGCCACAATCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCGCCAAATCCAAATTCCAAAGAGGTGACGAAAAGGGTGTATGCATCGGAACGCGAATGGAGATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTCATCCAATCTGGGAACCCCATTAGAAGATACTCCAAGAAGGATGTTATCCATTCGAAACCCGGGACCTTCGTCACCAGGCTTACACGATTTGCCGGCCCTTTGAAATGTAAAATGAATCAACCTTGTTAG 771 43.84 MVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVRNIIIHNLHIHDIKAGNGGFIRDSVSHYGYRTQSDGDGISMFGSSRVWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRVYASEREWRSWNWRSEGDLMMNGAFFIQSGNPIRRYSKKDVIHSKPGTFVTRLTRFAGPLKCKMNQPC 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 24206297 24211028 + MELO3C002205.2.1 Cme12g01753 344970
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01753 256 SUPERFAMILY Pectin lyase-like 1 256 IPR011050 -
Cme12g01753 256 Gene3D - 1 249 IPR012334 -
Cme12g01753 256 SMART amb_all 1 180 IPR002022 -
Cme12g01753 256 PANTHER PECTATE LYASE 18-RELATED 1 256 IPR045032 GO:0030570
Cme12g01753 256 PANTHER PECTATE LYASE 1 256 - -
Cme12g01753 256 Pfam Pectate lyase 11 174 IPR002022 -
Cme12g01753 256 PRINTS Pollen allergen Amb family signature 199 223 IPR018082 -
Cme12g01753 256 PRINTS Pollen allergen Amb family signature 157 176 IPR018082 -
Cme12g01753 256 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Cme12g01753 256 PRINTS Pollen allergen Amb family signature 135 154 IPR018082 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01753 Cme-Chr12:24206297 Cme03g01301 Cme-Chr3:22538065 4.28E-139 dispersed
Cme10g00443 Cme-Chr10:2815338 Cme12g01753 Cme-Chr12:24206297 1.79E-137 wgd
Cme12g01753 Cme-Chr12:24206297 Cme04g01960 Cme-Chr4:27216012 6.49E-135 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01753 K01728 - csv:101218812 502.286