Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g01753 | ATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACTGATAATAAAACATTAGATGGGCGCGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTCAGGAATATAATCATTCATAATCTTCACATTCATGACATCAAGGCTGGCAATGGAGGCTTTATAAGAGATTCGGTGAGCCACTATGGATACCGAACACAGAGCGATGGTGATGGAATCTCAATGTTCGGATCCTCGAGGGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTAATAGATGCAGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCACCATAACGATGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGCCGATGGGGATTTATTCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATCGGCGGCAGCCACAATCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCGCCAAATCCAAATTCCAAAGAGGTGACGAAAAGGGTGTATGCATCGGAACGCGAATGGAGATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTCATCCAATCTGGGAACCCCATTAGAAGATACTCCAAGAAGGATGTTATCCATTCGAAACCCGGGACCTTCGTCACCAGGCTTACACGATTTGCCGGCCCTTTGAAATGTAAAATGAATCAACCTTGTTAG | 771 | 43.84 | MVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVRNIIIHNLHIHDIKAGNGGFIRDSVSHYGYRTQSDGDGISMFGSSRVWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRVYASEREWRSWNWRSEGDLMMNGAFFIQSGNPIRRYSKKDVIHSKPGTFVTRLTRFAGPLKCKMNQPC | 256 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 24206297 | 24211028 | + | MELO3C002205.2.1 | Cme12g01753 | 344970 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g01753 | 256 | SUPERFAMILY | Pectin lyase-like | 1 | 256 | IPR011050 | - | |
| Cme12g01753 | 256 | Gene3D | - | 1 | 249 | IPR012334 | - | |
| Cme12g01753 | 256 | SMART | amb_all | 1 | 180 | IPR002022 | - | |
| Cme12g01753 | 256 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 256 | IPR045032 | GO:0030570 | |
| Cme12g01753 | 256 | PANTHER | PECTATE LYASE | 1 | 256 | - | - | |
| Cme12g01753 | 256 | Pfam | Pectate lyase | 11 | 174 | IPR002022 | - | |
| Cme12g01753 | 256 | PRINTS | Pollen allergen Amb family signature | 199 | 223 | IPR018082 | - | |
| Cme12g01753 | 256 | PRINTS | Pollen allergen Amb family signature | 157 | 176 | IPR018082 | - | |
| Cme12g01753 | 256 | PRINTS | Pollen allergen Amb family signature | 8 | 24 | IPR018082 | - | |
| Cme12g01753 | 256 | PRINTS | Pollen allergen Amb family signature | 135 | 154 | IPR018082 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme12g01753 | Cme-Chr12:24206297 | Cme03g01301 | Cme-Chr3:22538065 | 4.28E-139 | dispersed | |
| Cme10g00443 | Cme-Chr10:2815338 | Cme12g01753 | Cme-Chr12:24206297 | 1.79E-137 | wgd | |
| Cme12g01753 | Cme-Chr12:24206297 | Cme04g01960 | Cme-Chr4:27216012 | 6.49E-135 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g01753 | K01728 | - | csv:101218812 | 502.286 |