Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01756 ATGGAGGCTGCTGCTGCTTTTGGCCGTCCAAGGCCCGTTGTCAAGACCGAGAAACCTCCCGTTCGCGACGTTAGTCATGACGACGATCGGGATTCTCCCTCTAAACAACAACAACAACAACAACATCTCCTCGTTAAGAGAGCTGGGAACAACCATGCAAAACAAGAACATGATACTGAAGATAAAACAAGTTGTTCATCTGATAAAAAGGATTTGAGCTGCATCAAACTGCAGGAAGATCAATTGGAATCTGCTCGAGCAGAAATGGGGGAAGTAAGAGAAGAAAACCAAAGACTAAAACAAAGTTTAAACCAAATCATGAAGGATTATGAAGCTTTGAAAATGCAATTCCTAGGGATTGTCGGACGAGACTCTAAGAAATTACAAGACGACGACAACGATGTGAATAAGGAACAACAACAACAACAACAACACGATGACGATCAAATCGAACTGGTTTCACTTTCTTTGGGGAGGTTTCCGGTGTCGGAGAAGATCAAAAAAGTAGCTGATGAGAAAAGCTCTATGAATATCATCATAGGCGGTGGTGACCAGGACGAAGAAGCCGCGTGTAAAGAGGCTTTATCTCTCGGTTTGAACTGCAAATTCGAACGGGAAGAATCGATGGTGGCTGTCGTTAAAGAAGTCGATTCTCCAAATAGTTTTGATCATGAGGCGACGAAGGAGGAAGCTGGAGAGACAAATTGGCCATCTAAAGGGGGGAAGACAATGAGAAGTGTTGAAGATGATGTTACACCGCAAAACCCACCCAAACGCGCTAGAGTTTGCGTTAGAGCCCGATGTGAAACCGCCACGATGAACGATGGTTGCCAATGGAGGAAATATGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATATTATCGTTGCACAGGTTCACCTACATGTCCGGTAAGAAAACAAGTCCAAAGATGCGCTGACGACATGTCGATTTTGATCACCACCTATGAAGGTAATCACAACCACCCATTACCTGCCTCTGCCAACGCCATGGCCTCTACCACCTCCGCCGCTGCCTCCATGCTTCTCTCTGGCTCCACCACCTCCGCAACGACGGCGGCTTCGTCATCCACCGCATCGAATACTCTCCACGGCCTAAACTTTTACGCAAATAATTCTAAACCTAATTTTTACTTACCCAATAATAGTTCCTCTATAATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTTCTTCAAATTCCTCAACCCATTTTGGTAAGTTCACATCTAACTTTCCCAATTCTCGTTACCCTTTCACTGGCCAACTCGATTTTGGATCTTCTAGAAACAATGTGTTGTCGTGGAATAATGGTCTTCTTAGTTACAACAGAAATAACCACCCTACTACTACTACAACTGCCAACAATATCTATCAAAACTACATCCAACAACAACAACGAAACCCCACCACCTCACTACAACATCAGCAACCGCCTTTACCCGACACCATTGCTGCCGCTACCAAGGCCATCACGGCCGATCCGAGCTTTCAATCTGCTCTTGCCGCTGCACTTACATCGATCATTGGCACCGGGGGTGCTAGTGCAAGTGCTGGCCTCACCAAGTCATCGTCGGGAAGAGGCGAACAATCGTTGTTTCAATTGATGACGACGACGGCTACTACGAATAAAGGAAATGGATGTGGGACGAGCTTTTTGAACAACATTACGACGACCACCACCACCACCACGAGTAATTCACCACCAACAGGGAATATGGTGTTTGTTCCAACGAATTCAAAAAGTGCGTCGGCTTCTCCAGGTGATCATATTGATCTTACCCATTAA 1848 45.62 MEAAAAFGRPRPVVKTEKPPVRDVSHDDDRDSPSKQQQQQQHLLVKRAGNNHAKQEHDTEDKTSCSSDKKDLSCIKLQEDQLESARAEMGEVREENQRLKQSLNQIMKDYEALKMQFLGIVGRDSKKLQDDDNDVNKEQQQQQQHDDDQIELVSLSLGRFPVSEKIKKVADEKSSMNIIIGGGDQDEEAACKEALSLGLNCKFEREESMVAVVKEVDSPNSFDHEATKEEAGETNWPSKGGKTMRSVEDDVTPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSTTSATTAASSSTASNTLHGLNFYANNSKPNFYLPNNSSSIISSTSPTHPTITLDLTSNPSSSSSNSSTHFGKFTSNFPNSRYPFTGQLDFGSSRNNVLSWNNGLLSYNRNNHPTTTTTANNIYQNYIQQQQRNPTTSLQHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGTGGASASAGLTKSSSGRGEQSLFQLMTTTATTNKGNGCGTSFLNNITTTTTTTTSNSPPTGNMVFVPTNSKSASASPGDHIDLTH 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24233364 24237135 + MELO3C002202.2.1 Cme12g01756 344973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01756 615 MobiDBLite consensus disorder prediction 126 148 - -
Cme12g01756 615 Coils Coil 75 116 - -
Cme12g01756 615 MobiDBLite consensus disorder prediction 580 609 - -
Cme12g01756 615 MobiDBLite consensus disorder prediction 15 35 - -
Cme12g01756 615 SUPERFAMILY WRKY DNA-binding domain 266 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme12g01756 615 Gene3D WRKY domain 258 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme12g01756 615 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 609 IPR044810 GO:0003700
Cme12g01756 615 MobiDBLite consensus disorder prediction 49 71 - -
Cme12g01756 615 SMART WRKY_cls 273 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme12g01756 615 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 48 609 - -
Cme12g01756 615 Pfam WRKY DNA -binding domain 274 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme12g01756 615 MobiDBLite consensus disorder prediction 221 258 - -
Cme12g01756 615 MobiDBLite consensus disorder prediction 580 615 - -
Cme12g01756 615 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme12g01756 615 MobiDBLite consensus disorder prediction 126 145 - -
Cme12g01756 615 MobiDBLite consensus disorder prediction 1 71 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01901 Cme12g01756 CCT
Cme02g01901 Cme12g01756 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00436 Cme-Chr1:3169672 Cme12g01756 Cme-Chr12:24233364 5.10E-46 dispersed
Cme06g01299 Cme-Chr6:10822082 Cme12g01756 Cme-Chr12:24233364 2.31E-50 dispersed
Cme08g00421 Cme-Chr8:2563779 Cme12g01756 Cme-Chr12:24233364 1.51E-44 dispersed
Cme12g01756 Cme-Chr12:24233364 Cme04g02759 Cme-Chr4:32820268 7.10E-25 dispersed
Cme12g01756 Cme-Chr12:24233364 Cme02g01901 Cme-Chr2:25476555 9.78E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42366 PF03106 WRKY 5.90E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01756 - - cmo:103482921 1034.25