Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01759 ATGCAGAGTTTCGGTTTCAGACGCCTGGGAGATGCACCAAGGGCCACGCCCTTCTGGACCCAAGCAAATGCCCTCCTCATAAAAAACTTAACCTACCAGAAACGAAATTTGAGGAGAAATATTAGTCTGATTTCTTTTCCAATCATCCTCTGTTCATTGCTCGCTGCAATTCAAACGTTTGTCGACAAAAACTTGGATAACCCGGATCTCAATTGTGGTTGTGCTTGTGTTGATAAGAATGGAGATGGTAAATGTGAGAAAGTTTGTGGGATAGAGTACTCAAGTCCGATGCAAGCACCAAACTGCCCCAATCCAAGTCCTCCACGATGGGCTCCCGTATTGCAAATGCCTGCTCCTAATTTCCGGGCTGTGAGAACAGATTTTTTTCCATATACAGACTTGCCAAATGAATCATGCAGGGAGTCAGCGTCATGTCCTGTTACTATGCTTTTCACTGGAAAGAATCGTTCTCTTGGAAATATTTTGGCTGGAAATATGGTCCCAAGTTCTTTGTTTTGGAATTCTTCTGATGCTATGAATGCTGCATCCCTTAACGTTTTGGGATCAGAAAAGAAGCCTACAACAGGCGTTGCATGTGTTCAAGGCCTGCAATTGTGGCGCAATAGTTCTTCACAGGTGAATGATGAGATATACAGAGGTTACATAAACGGGAATCCCGAGGGAAAAATCAATGAGATTCTTTCAGGCTTTGATTTCTTAAATTCGGATAGGAACAATTTTAATGTGACTATATGGTATAATTCATCTTATAAGGCTTCCGCTGGCTCTCCGAACGTTCTGTTGCGGGTGCCACGCTTGGTTAATCTGTCACTACCTTTCTACTTTCCTAGTATGATGAAGGCTGACAAGGGTAGTCCTCTCAATATGTTCTTAGGCACAGAGATGCCCTTTCAGTTTGTCAAAGAAATGCCGAAACATGAAACAAAGACGCAGATAGATTTTTCTTCCAACCTTGGTGCGCTATTTTTTACGTGGGTCATCCTCCAGCCTTTTCCAGTTATCTTGACATCGTTGGTAAGTGAGAAGCAACAGAAACTAAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCATATGCTTATTTTCTCACAGTTTATGCAGTATACATGTTTTGTTTTGTGATGTTTGGCTCAGTTATAGTCTCCGTTGCCTTTCTAATGGCTGGCATGTTTTCAGATGTCAAGACAGCTGAAGATGGCTGGCTTATATTAATGGAGTTATATCCTGGATTTATGCTATATCGTGGGTTGTATGAGTTTGCATTTTTTTCTGTCACTGGGAAGATAATAGGGACTTCTGGAATGCAATGGGGAGATTTGACTGATAGTACCAATGGAATGGGAGAAATCTTGATCATTATGCTTTTTGAGTGGATAGTGGTGCTTCTAATTGCATATTATATCGATCAAGTTTTATCATCGGGGAAGCATCCATTGTTTTTCCTTCAAAGACACGACAAAAAAACTACATCGAACAATCTTGTTCTGGAGAGGCAACGATCAAAAGTTGTGGTTCAGATTGATAAACATGATGTCAGAGAAGAGAGGGAGAAGGTCGAACGGTTGCTAAATGAAAGACATCCAGGTCATGGCGTCATATGCGACCATCTCAAAAAGGTGTATCCAGGAAGGGATGGAAACCCCGAGAAGTTTGCAGTTAGAGGACTGTCTCTTGCCATAGACCGAGGAGAATGCTTTGGGATGCTAGGTCCTAATGGTGCGGGAAAAACCTCCTTTATCAGTATGATGATTGGTCTTACAAAACCAACCGCTGGAACAGCCTTTGTTGAAGGTCTGGACATAAGAACTGAGATGAATGCTGTATATGAAAGCATGGGCGTTTGTCCACAGCACGACCTGCTATGGGACAACTTAACAGGAAGGGAACACCTACTCTTTTATGGCAGACTGAAGAGCTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTGAAGGAGGTCAACCTCTTCAAAGGAGGAGTAGCAGACAAACAAGCTGGGATGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTCGCTATATCACTAATTGGGGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACTGGCCTAGATCCAGCTTCAAGAAAAACTTTATGGAATGCTGTGAAGCATGGAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCAGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGATGCCTCCAATGTGTTGGACATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGTTTATGTATTTACAATGACAACATCCGCTGTTCATGAGGGATATGTTGAGGACATGGTGAAGCAATTAGCCCCTGGATCTAACAAGATTTACCATTTATCTGGAACACAAAAATTTGAGCTTCCAAAACACGAGGTTCGAATTGCTGATGTGTTTTTAGCAGTTGAAAAGGCCAAAAGCAGATTTGCAGTTTTGGCTTGGGGTTTGTCTGATACCACTTTAGAAGACGTCTTTATCAAAGTTGCTAAGGGAGCTAAGACTTCACATATGCTTTCTTGA 2604 42.01 MQSFGFRRLGDAPRATPFWTQANALLIKNLTYQKRNLRRNISLISFPIILCSLLAAIQTFVDKNLDNPDLNCGCACVDKNGDGKCEKVCGIEYSSPMQAPNCPNPSPPRWAPVLQMPAPNFRAVRTDFFPYTDLPNESCRESASCPVTMLFTGKNRSLGNILAGNMVPSSLFWNSSDAMNAASLNVLGSEKKPTTGVACVQGLQLWRNSSSQVNDEIYRGYINGNPEGKINEILSGFDFLNSDRNNFNVTIWYNSSYKASAGSPNVLLRVPRLVNLSLPFYFPSMMKADKGSPLNMFLGTEMPFQFVKEMPKHETKTQIDFSSNLGALFFTWVILQPFPVILTSLVSEKQQKLRIMMKMHGLGDGPYWMISYAYFLTVYAVYMFCFVMFGSVIVSVAFLMAGMFSDVKTAEDGWLILMELYPGFMLYRGLYEFAFFSVTGKIIGTSGMQWGDLTDSTNGMGEILIIMLFEWIVVLLIAYYIDQVLSSGKHPLFFLQRHDKKTTSNNLVLERQRSKVVVQIDKHDVREEREKVERLLNERHPGHGVICDHLKKVYPGRDGNPEKFAVRGLSLAIDRGECFGMLGPNGAGKTSFISMMIGLTKPTAGTAFVEGLDIRTEMNAVYESMGVCPQHDLLWDNLTGREHLLFYGRLKSLKGSALIQAVEESLKEVNLFKGGVADKQAGMYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKTLWNAVKHGKQDRAIILTTHSMEEAEVLCDRIGIFVDGCLQCVGHPKELKARYGGVYVFTMTTSAVHEGYVEDMVKQLAPGSNKIYHLSGTQKFELPKHEVRIADVFLAVEKAKSRFAVLAWGLSDTTLEDVFIKVAKGAKTSHMLS 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24249736 24258483 + MELO3C002200.2.1 Cme12g01759 344976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01759 867 SMART AAA_5 575 758 IPR003593 -
Cme12g01759 867 Coils Coil 518 538 - -
Cme12g01759 867 PANTHER OS08G0398300 PROTEIN 13 191 - -
Cme12g01759 867 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 404 862 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cme12g01759 867 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 191 396 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cme12g01759 867 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 13 191 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cme12g01759 867 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 545 782 IPR003439 GO:0005524
Cme12g01759 867 PANTHER OS08G0398300 PROTEIN 404 862 - -
Cme12g01759 867 PANTHER OS08G0398300 PROTEIN 191 396 - -
Cme12g01759 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 774 IPR027417 -
Cme12g01759 867 ProSitePatterns ABC transporters family signature. 684 698 IPR017871 GO:0005524
Cme12g01759 867 CDD ABC_subfamily_A 545 770 - -
Cme12g01759 867 Pfam ABC transporter 567 711 IPR003439 GO:0005524
Cme12g01759 867 Gene3D - 537 800 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01759 - - - csv:101218105 1399.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01898 Cme12g01759 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01899 Cme-Chr2:25466508 Cme12g01759 Cme-Chr12:24249736 2.35E-73 dispersed
Cme03g00110 Cme-Chr3:1554177 Cme12g01759 Cme-Chr12:24249736 6.47E-17 dispersed
Cme12g01759 Cme-Chr12:24249736 Cme02g00180 Cme-Chr2:1400425 6.50E-11 dispersed
Cme06g02840 Cme-Chr6:35859192 Cme12g01759 Cme-Chr12:24249736 2.84E-13 transposed
Cme07g00795 Cme-Chr7:7530189 Cme12g01759 Cme-Chr12:24249736 1.16E-10 transposed
Cme12g01759 Cme-Chr12:24249736 Cme02g01898 Cme-Chr2:25457005 0 wgd
Cme12g01759 Cme-Chr12:24249736 Cme09g00284 Cme-Chr9:2201844 4.03E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75