Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01777 ATGCCGCCGAGACGATACGCTTTTGGACGGGCCGATGAGGCCACCCACCCCGACTCCATTCGTGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCTGGCGAAGGCTCCGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTACGGCCATGGAAGTTACGGCCGAGGAGGTCACGGTTATGGTCACGGATATGGTAGAAAGGGGGCCGACACAGGGAGAGCTGCGTCGGATTTAGTAGTGATAGCGATAGCACACGCGTTTGCACTGTTCTCGGCGGTGGCAGCGAGCATCAACATATCGGGTGGGCATGTGAATCCTGCAGTAACGTTTGGGGCCCTTATTGGAGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCACAGATTTTGGGTGCCATTATCGCTTCACTTCTCTTGAGACTTGCAACGGGTGGCATGAGGCCTATGGGTTTCTTTGTTTCATCAGGCGTATCAGAATTGCACGGGTTCCTACTAGAGATAATCCTTACATTTGCTTTGGTCTACACAGTATACGCAACAGCAATAGACCCGAAGAGGGGCAGCTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCAGCAAGGGCATTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTACTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTCATTCCGGTTGAACCTCCTCTACATACTCACCAGCCCTTGGCTCCAGAGGATTACTAA 855 52.4 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGRKGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALIGGRISLIRAFFYWVAQILGAIIASLLLRLATGGMRPMGFFVSSGVSELHGFLLEIILTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24357524 24359974 - MELO3C002183.2.1 Cme12g01777 344994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01777 284 CDD MIP 21 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 Gene3D Glycerol uptake facilitator protein. 5 270 IPR023271 -
Cme12g01777 284 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Cme12g01777 284 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 SUPERFAMILY Aquaporin-like 13 275 IPR023271 -
Cme12g01777 284 TIGRFAM MIP: MIP family channel proteins 25 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme12g01777 284 PANTHER AQUAPORIN-8 77 284 IPR034294 -
Cme12g01777 284 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Cme12g01777 284 PANTHER - 77 284 - -
Cme12g01777 284 PANTHER - 3 49 - -
Cme12g01777 284 Pfam Major intrinsic protein 14 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02488 Cme-Chr4:31313855 Cme12g01777 Cme-Chr12:24357524 3.78E-94 dispersed
Cme09g00564 Cme-Chr9:5803978 Cme12g01777 Cme-Chr12:24357524 2.41E-46 dispersed
Cme09g00565 Cme-Chr9:5810542 Cme12g01777 Cme-Chr12:24357524 1.52E-41 dispersed
Cme09g01609 Cme-Chr9:20879919 Cme12g01777 Cme-Chr12:24357524 2.09E-76 dispersed
Cme12g01777 Cme-Chr12:24357524 Cme08g02314 Cme-Chr8:30107847 6.37E-35 dispersed
Cme12g01777 Cme-Chr12:24357524 Cme08g01268 Cme-Chr8:9177803 1.84E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01777 K09873 - csv:101208863 505.753