Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01778 ATGGAAGCAGCAGGCATGCCTGCTGTGGAAGAGAAGGTAGATGAAATCGAACCTTCAACAATGAATAACGATGAGTCGGTGGAAGAAGATGAAGGAGAGGAGGACCTTTCATGGTCATCAGACTCTGAGATTGGAGATGCATTGGACTGGTTGGATGCGAAGGAAGATCGAGAAACAGTAGATGGGGCTTTTTCACTCAATGCTAGGCGTCCTAATGCCCATGGTGGGCTTTATTCTCGTCATAATTCCTCAACTCTTCAACCTCTCTCAAATCGGAACCAAAAGTTTACCAATCACATTAGAGCTTCACCTCTTGCGGAATGGGAAGGGAGGTTTAACGTGGGAATGTCAAATTCTGTTACCACTGCCATTCGTGACAGTGTCAAGGAAATGGCTATAGGAAAGACGAAAACTACAGAGAAAGCTGATCGTGCAACTGTTGAACAGGCAATTGATCCTAGAACTCGAATGGTTTTATTCAAGATGCTCAACCGAGGTGTATTTCACGACATTAATGGCTGCATTTCTACTGGAAAAGAAGCTAATGTCTATCACGCAACGAAATCTGATGGTCAAGAATTCGCTATCAAAATCTACAAAACTTCAGTTTTGGTGTTTAAGGACAGGGATCGCTATGTCCAAGGCGACTACCGTTTCAGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTCAAGACATGGGCTGAGAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCTGGAATTAGATGTCCTACCCCTCTTCTCTTGAGAATGCATGTGCTGGTCATGGAGTTCATTGGCAAGACAGGTTGGGCTGCACCTCGTCTGAAGGATGCTGCCTTGTCATTGAACAGGCTACGTGAAAGTTATTTGGAGATAATTATTACAATGCGGACCCTCTACCAGAAGTGCAAGTTAGTCCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAAGCAGTTGATCTCGACCATCCTCATGCCCTCGATTTCCTCCGTGAAGATTGTCTTCATGTTTCTGATTTCTTCAAAAAACATGGTGTAGCGGTAATGACAATACGAGAACTGTTTGATTTTATAGTTGATCCATGCCTCACTGATGAGACAATCGATAATTATCTAGAAGAGATCCAAGAGAAAATCTCGGCTAGAGGTGATATATCCGTGGAGGATGAAATTGCAGATTCTGTATTTGTCCAGTCATATATTCCGAAGACACTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGGACACTGAAGATATGTATTATAAGACCATTACAGGCTTAAAACAGGCCCTTCCAATAGCTCAACCTACGTCAGATCAAAAAGATGAGGAAGAACACAATACAGACATGATTGGACCATCCGAAAATACAACCAGTTTGTCGAACTCTTGCGAGAAAGAGACCGAATCAACATCAGAGGAAGATGAAGAGAGCTCGAATGAGTCAGAAGGAGAACTGGGTTCTTCAACCGAGACTACGCAGACGCCAGTTGACAGAAAAACTGCGAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGGCTCGCAAGAACAAGATCCCAAAGGCTGTAAAGAAACGAAAGAAGAAGTTGGCAAAGTCCCATAAGTAA 1689 42.57 MEAAGMPAVEEKVDEIEPSTMNNDESVEEDEGEEDLSWSSDSEIGDALDWLDAKEDRETVDGAFSLNARRPNAHGGLYSRHNSSTLQPLSNRNQKFTNHIRASPLAEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAIKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRMHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEIIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDNYLEEIQEKISARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPIAQPTSDQKDEEEHNTDMIGPSENTTSLSNSCEKETESTSEEDEESSNESEGELGSSTETTQTPVDRKTARKENKKKVKEEKREARKNKIPKAVKKRKKKLAKSHK 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24361266 24366689 + MELO3C002182.2.1 Cme12g01778 344995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01778 562 Coils Coil 524 544 - -
Cme12g01778 562 MobiDBLite consensus disorder prediction 21 40 - -
Cme12g01778 562 MobiDBLite consensus disorder prediction 456 562 - -
Cme12g01778 562 MobiDBLite consensus disorder prediction 521 544 - -
Cme12g01778 562 MobiDBLite consensus disorder prediction 1 42 - -
Cme12g01778 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 24 560 - -
Cme12g01778 562 SUPERFAMILY Protein kinase-like (PK-like) 171 356 IPR011009 -
Cme12g01778 562 MobiDBLite consensus disorder prediction 475 490 - -
Cme12g01778 562 SMART rio_2 140 376 IPR000687 GO:0004674|GO:0005524
Cme12g01778 562 Gene3D Transferase(Phosphotransferase) domain 1 276 417 - -
Cme12g01778 562 Pfam RIO1 family 182 369 - -
Cme12g01778 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 24 560 - -
Cme12g01778 562 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 309 320 IPR018935 GO:0004674|GO:0005524
Cme12g01778 562 MobiDBLite consensus disorder prediction 545 562 - -
Cme12g01778 562 CDD RIO1_euk 171 360 - -
Cme12g01778 562 PIRSF STPK_RIO1 3 562 IPR017407 GO:0004674
Cme12g01778 562 Gene3D Phosphorylase Kinase; domain 1 168 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01778 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 965.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02641 Cme-Chr6:33572479 Cme12g01778 Cme-Chr12:24361266 3.11E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34