Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01789 ATGCAGTGTGCTCTTGTAAGAAGTAGTGATTTTCAGAAAGTTTTAGACAAAGGAAAGGAGTCGTTAGATTTGAGACTCGAGAAAAACAGTTGTTCCAGGGGAATAAGTAAGGATTTTGAAGTTTCTTCTTTTGCATGGAGGAATTTTTTTGATTACAGATGTGCCGTCATTAGGTTTCTTACACTCGAATCTGATGGACTATGGAGAATTGTTGCACTTCCTCCACAATACTTAGATAGCTTGAACGTGAGCTGCCTGCCTCAAATGAATCAGTTTACAGCTGGGAGAAAATTGGTGCAGAAAGGCTCTGCCTCCAATGGTACATATTCATTTAATTCACTCAGATGTAGAAGCTTGCTGGAGTCCAATAAAAAGTTACTGGATAGTAAAGCAATTAAGTCACCAAATAAATCCTCTGGCAAGCTCCTTTGTACAAGTTCATGCTCCGCCTCTGCTTTGATGTCAAGTGACTCTATTGCAACCTCTGACATTCCCATTGATGGAGCTAAAATGCAGAGATATGGGAAGAAAAATCCGAGAAAGAAGGCAAAAAAGAAAGAACTAGAATATAAGAAGATATCTTCTGAGTTTGTCTCTGCTGAAACAGAAGTATCACTCCAGGATTCTGCCCGTGCAAGTTTTTTGTCTGAAGCATGTGGCAGTAATGATTCAGATTTTAGAAATAGAACTGTTTTATGCTCGATTGCACCAGAAACTTTTCTGCCAGATTTTGAACGAGATTCTGAGATTCAGCCACTTGGAACCGTGGATTCAGTATCATCTGAAATTGTTGACGGGCATTCATCTAAGGTTTCATCTTCTGCAATAAAGAATTTTAGTGGGTATCATAAAGTTTGTGGATCTGAAAACCAGGCCCTAACCAACGCACCTGGTTGTTTCCATGTCGATGTGGGACTAAATTCAAGAGAGAGTTTATTGGCTGGCAGCTGCAATGATTTTTGCTCTACGGATTCTTTGGATAATAACTCCTGTGATTCTAAGTGGGTTAGTTTAAACAGTAACTGTGATGATTTGAACTTAAAATTAAATGAAAAGAAAGGTTTTGGAGTTGATCTGTTGGAAGAACGAAGTTCACCTTATAGAGAGAACTGTTCTCAGAACTCAGCAAGAGATGAAGTAGATTTGAACACTGAAGTGGAGAAAGGTATTCAGGGATGTACTGTTAGTGAAACTTGTTCAGTTTTACCTGGAAAGAAAACTAAACAAAATAAAAAATTGACCGGGAGTTCAAGGATGAATAGATATGGTGGTTTGGGGAGTTCACAAAGACGTACGGGGAAGGAAAACAGACATACTGTCTGGCAAAAGGTTCAAAGAAGCAATAGTGGTGGATGTTCTGAACAGTTGGACCAAGTTAGTCCTATCAGCAAACAGTTTAAAGGCATTTGTAATCCTGTTGCTGGTGTGCAAATGCCAAAGGTCAAGGATAAAAAAACAGGGAACAGAAAACAGCTGAAAGAAAAATGTTCCAGGAGGTTGAAAAGAAAAAATACTTCAGGACAAGAGAAGATCTATCGTCCTACAAGGAATAGTTGTGGTAGTAATACAAGTTCAATGGTTCACAAACCACCAAATGAAAGGTTGGATATTCGATCTATGGGCTTTGACATAAGAAGATCAAGTGGCAATCCAAGATCTCGTTTTCAAAATGATACTACTGATAAATGCATGAATTCTGAAGCAGTTGAAGGTAAACAAGTCCATCCAGATGAATTGTTCTCAAACAAACTTATCTACGATGGTTTGAGCAGTCAAAAAGTAGAGAACGACTCTAGCTCATTGCCAAAGTCATGCAACTCCTCAAATCAGTCAAATCCAGTAGAGGTTAAGTCTCCTGTTTACCTTCCTCATCTTTTCTTTCAAAAAGTAGAGAACGACTCTAGCTCATTACCAAAGTCATGCAACTCCTCGAATCTTTCAAATCCAGTAGAGGTTAAGTCTCCTGTTTACCTTCCTCATCTTTTCTTTCAAAAAGTAGAGAACGACTCTAGCTCATTGCCAAAGTCATGCAGCTCCTCAAATCTGTCAAATACAGTAGAGGTTAAGTCTCCTGTTTACCTTCCTCATCTTTTCTTTCAAGCAACAAAAGGAAGTTCCCTGGCTGAACGCAGCAAGCATGAAACCCAATCTAGATCACCTCTTCAGAACTGGTTGCCAAGTGGAGCAGAAGGTTCTAGATCGACCACCTTGGCCAGACCTGATTTTTCATCTCTGAGAGATGCAAATACGCAGCCTGCTGAGTTTGGCACTTCGGAAAAATCAATTAAAGAAAGAGTCAATTGCAGCTTATTAAATCCTGTTTCTGATGTACTTGAGGGGATCCAGCATTATAGAGATAGGGATCATGGTTCTTTAGAACATGAATGTGAGGTGCAGAAGATTTATGGCTTTGATACAACCACACTACAGAATCAAAAGTGTGAGTTCAATGTGGATGAACATTTTAATTGCAAATCCTCATGTGAAGATGTGTCTAGAATGGAACAAGCAGTTAATAATGCATGTAAGGCGCAATTGGCATCTGAAGCTATTCAAATGGAAACTGGTTGTCCAATTGCAGAGTTCGAAAGATTCCTTCATTTATCCTCCCCTGTTATCGACCAGAGACCCAAGTTAAGAAGCAGTGAAATTTGCCCAAGAAATCTGCCAGGTGATGTGATACCATGTAGCAATGAGACTACAAACATTTCTTTGGCTTGCCTGTGGCAATGGTATGAAAAACATGGCAGCTATGGCTTAGAAATAAAAGCCAAGAGTCATGAAAATTCAAATGGATTTGGGGTGGTTAACTCTGCATTCCGTGCATATTTTGTTCCATTTCTTTCTGCTATTCAACTATTTAAAAGCCGTAAAACTCATGTGGGAACAACTACTGGTCCTTTGGGATTTGATTCATGTGTAAGTGATATAAAAGTGAAGGAGCCCTCTACTTGTCATCTTCCAATATTTTCACTCCTTTTTCCTGAGCCCAGTACTGATGATACAAGCGTTCTGCGGGTTTGTAATCGATTTCATAGTTCAGAGCAAGATTTAGCTTCTGAAAAGAGGAAATCTTCAAAACAATCAGCGAGCCTACAGTTATCTGGAGAATCAGAACTTATTTTTGAATATTTTGAAGGGGAACAACCTCAACTGAGAAGGCCATTATTTGATAAGTAA 3180 39.12 MQCALVRSSDFQKVLDKGKESLDLRLEKNSCSRGISKDFEVSSFAWRNFFDYRCAVIRFLTLESDGLWRIVALPPQYLDSLNVSCLPQMNQFTAGRKLVQKGSASNGTYSFNSLRCRSLLESNKKLLDSKAIKSPNKSSGKLLCTSSCSASALMSSDSIATSDIPIDGAKMQRYGKKNPRKKAKKKELEYKKISSEFVSAETEVSLQDSARASFLSEACGSNDSDFRNRTVLCSIAPETFLPDFERDSEIQPLGTVDSVSSEIVDGHSSKVSSSAIKNFSGYHKVCGSENQALTNAPGCFHVDVGLNSRESLLAGSCNDFCSTDSLDNNSCDSKWVSLNSNCDDLNLKLNEKKGFGVDLLEERSSPYRENCSQNSARDEVDLNTEVEKGIQGCTVSETCSVLPGKKTKQNKKLTGSSRMNRYGGLGSSQRRTGKENRHTVWQKVQRSNSGGCSEQLDQVSPISKQFKGICNPVAGVQMPKVKDKKTGNRKQLKEKCSRRLKRKNTSGQEKIYRPTRNSCGSNTSSMVHKPPNERLDIRSMGFDIRRSSGNPRSRFQNDTTDKCMNSEAVEGKQVHPDELFSNKLIYDGLSSQKVENDSSSLPKSCNSSNQSNPVEVKSPVYLPHLFFQKVENDSSSLPKSCNSSNLSNPVEVKSPVYLPHLFFQKVENDSSSLPKSCSSSNLSNTVEVKSPVYLPHLFFQATKGSSLAERSKHETQSRSPLQNWLPSGAEGSRSTTLARPDFSSLRDANTQPAEFGTSEKSIKERVNCSLLNPVSDVLEGIQHYRDRDHGSLEHECEVQKIYGFDTTTLQNQKCEFNVDEHFNCKSSCEDVSRMEQAVNNACKAQLASEAIQMETGCPIAEFERFLHLSSPVIDQRPKLRSSEICPRNLPGDVIPCSNETTNISLACLWQWYEKHGSYGLEIKAKSHENSNGFGVVNSAFRAYFVPFLSAIQLFKSRKTHVGTTTGPLGFDSCVSDIKVKEPSTCHLPIFSLLFPEPSTDDTSVLRVCNRFHSSEQDLASEKRKSSKQSASLQLSGESELIFEYFEGEQPQLRRPLFDK 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24422249 24427363 + MELO3C002172.2.1 Cme12g01789 345006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01789 1059 MobiDBLite consensus disorder prediction 708 760 - -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 406 438 - -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 717 760 - -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 499 533 - -
Cme12g01789 1059 PANTHER DUF789 FAMILY PROTEIN 665 1059 - -
Cme12g01789 1059 PANTHER DUF789 FAMILY PROTEIN 1 667 - -
Cme12g01789 1059 Pfam Protein of unknown function (DUF789) 860 1059 IPR008507 -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 406 430 - -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 510 529 - -
Cme12g01789 1059 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 665 1059 - -
Cme12g01789 1059 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 1 667 - -
Cme12g01789 1059 MobiDBLite consensus disorder prediction 595 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01789 - - - csv:101212209 1765.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g952 . . . . . . . . . Cmo18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00276 Csa01g00754 . Cme12g01789 . . . . . . . . . . . . Cma18g00102 . Car18g00092 Cpe09g01088 . Bhi08g01351 Tan05g2137 . . . . . Cla01g01459 Cam01g1526 Cec01g1567 Cco01g1614 Clacu01g1550 Cmu01g1440 Cre01g1362 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008692 0 4 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 2 34