Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01797 ATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCTGGCGGTGGCGCCGTCTCCTATCCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACAATTACTCCCTCGTCATCCTCCGATCTTTTATGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCCTTCCTCTCCTTCACATCCGAGGCATTTCCACCTTTCAGCACCGGTGGCGGTGGGAATGGCGGTTTCCCTATCATATTCTCTACGACATCTTCATCTGGTGGCATTGGCGGTGGGGGTTCTATGATGAATGATCTTTCGGCGCTATTGGGAGGCGGTTCTCTTCGATCGTCGTCGTTGCAAAACCCTGACGGTTTTAATCCCTTGCTTTTTCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCTTCGGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGCGACTACTTCTTTGGCCCCGGCCTTGAGCAGTTGATTCAACAGCTTGCTGAAAACGATCCGAACCGATATGGAACCCCTCCCGCTTCAAAGTCGGCCATTGAAGGACTTCCAGATATCAAGATTACGGAGGAATTGTTGGCTACGGATTCTTCACAGTGCGCTGTGTGTAAGGATACGTTTGAGCTTGACGAGGTGGCAAAACTGATGCCTTGCAAACACATATATCACGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGAACTCGTGCGTCTTCAGCTCCTAATCGGAGTCAAAGCGAAAGTCAACCCTTTGGGGATTCTTCCACTGGTGGGGAAAATGTTGTCGGAAGCGATCCTAATTCTGACGAGAACTCGCAGACTCAACAAATGGGAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGGTTTGGTTCAGCTGCTGAGACTAGTAACAGTGGAGGTGGCAACAACAGTGGAAATAACGACGAACCTAGCTCCAGAAATAGGGGAAGCCAGAGTTCTTCAGAGCCAATGCAGGAAGATCTCGATTGA 1134 49.21 MSSSGGNSGDGAGGGAVSYPPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVPNPFLSFTSEAFPPFSTGGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSLQNPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPDIKITEELLATDSSQCAVCKDTFELDEVAKLMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRASSAPNRSQSESQPFGDSSTGGENVVGSDPNSDENSQTQQMGERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNNDEPSSRNRGSQSSSEPMQEDLD 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24472027 24476895 - MELO3C002163.2.1 Cme12g01797 345014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01797 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Cme12g01797 377 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Cme12g01797 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 344 - -
Cme12g01797 377 MobiDBLite consensus disorder prediction 339 377 - -
Cme12g01797 377 SMART ring_2 223 263 IPR001841 -
Cme12g01797 377 SUPERFAMILY RING/U-box 211 271 - -
Cme12g01797 377 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Cme12g01797 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 16 344 - -
Cme12g01797 377 MobiDBLite consensus disorder prediction 278 322 - -
Cme12g01797 377 Pfam Ring finger domain 222 264 IPR001841 -
Cme12g01797 377 MobiDBLite consensus disorder prediction 273 377 - -
Cme12g01797 377 CDD RING-H2_RNF126_like 222 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01797 - - K11982 csv:101205252 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02515 Cme-Chr1:33155972 Cme12g01797 Cme-Chr12:24472027 1.56E-23 dispersed
Cme04g02637 Cme-Chr4:32166057 Cme12g01797 Cme-Chr12:24472027 5.22E-34 dispersed
Cme05g00008 Cme-Chr5:72377 Cme12g01797 Cme-Chr12:24472027 1.03E-47 dispersed
Cme06g00403 Cme-Chr6:2573969 Cme12g01797 Cme-Chr12:24472027 4.77E-13 dispersed
Cme06g02867 Cme-Chr6:36111201 Cme12g01797 Cme-Chr12:24472027 5.33E-36 dispersed
Cme08g02062 Cme-Chr8:26030741 Cme12g01797 Cme-Chr12:24472027 1.94E-31 dispersed
Cme09g00186 Cme-Chr9:1440617 Cme12g01797 Cme-Chr12:24472027 1.02E-34 dispersed
Cme09g00271 Cme-Chr9:2090379 Cme12g01797 Cme-Chr12:24472027 4.06E-24 dispersed
Cme10g00409 Cme-Chr10:2608546 Cme12g01797 Cme-Chr12:24472027 2.01E-24 dispersed
Cme11g01324 Cme-Chr11:20118849 Cme12g01797 Cme-Chr12:24472027 6.67E-36 dispersed
Cme12g01797 Cme-Chr12:24472027 Cme12g01799 Cme-Chr12:24481845 4.45E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44