Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01807 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAACGAAAAAGACGACCCGCGGGTACTCCAGACCCAGATGCTGAGGTGGTTTCTCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAGATGCATCGACGTCGACACAAGGTACCATGGAAGCTGTTGAAAAGAACGGAAGCGACAACCGTAGTGAGGAAACGGGTGTTTGTTTGCCCCGAACCGAGCTGTTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGAATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGTTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCCCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGATTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATAATTGCAAATTGGGTCATCATCATCATCATCAACAGCAACAATCAGACCAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCAAAATCAAAACCAAAACCCAAAATTTACTTCAACTCATCATCATAATCATGGAGCTGACAAATATTCGAAAAAAACAACAATAATTCCTCAAAGAATTATTGGCCATAATCATCAAAATCTAGACCTTCAACTTTCCACCAATTCAACAACTTCAATTCACGTTTCAGTTTCTCCGAAAAGACATGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGGGAGAAGTTACACGATCATCATGATAATAATAATAATAATAATAGTAATGATCATGATCATAATGACGACGACAACGATGAGAAATTAGGTCTTCTGAAGCTGAAAGAAGAAGCTAAAGAGCAAATGAGAATGGCCATGGAAGAGAAAGCAATGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAAGAGTTGGTGAATGCCAAGAGAATGCGACAACAAGCACAAGCTGAGTTACAAAGAGCACTTGTTTTGAAAGAACATGCCATCAAGAAAATCAATTCTACTATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTCCCTAAAATTTGA 1281 38.49 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATTVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCKLGHHHHHQQQQSDQKIPCLSRTASSPTPSPSSDTNFSFLNQNQNQNQNPKFTSTHHHNHGADKYSKKTTIIPQRIIGHNHQNLDLQLSTNSTTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKLHDHHDNNNNNNSNDHDHNDDDNDEKLGLLKLKEEAKEQMRMAMEEKAMAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALVLKEHAIKKINSTILQITCQVCRQHFHPFPKI 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24542528 24544841 + MELO3C002155.2.1 Cme12g01807 345024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01807 426 SMART c2h2final6 136 163 IPR013087 -
Cme12g01807 426 SMART c2h2final6 100 130 IPR013087 -
Cme12g01807 426 SMART c2h2final6 57 79 IPR013087 -
Cme12g01807 426 MobiDBLite consensus disorder prediction 197 239 - -
Cme12g01807 426 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cme12g01807 426 PANTHER OS03G0310200 PROTEIN 14 421 IPR039288 GO:0009630
Cme12g01807 426 MobiDBLite consensus disorder prediction 188 250 - -
Cme12g01807 426 Coils Coil 341 403 - -
Cme12g01807 426 MobiDBLite consensus disorder prediction 23 43 - -
Cme12g01807 426 Gene3D Classic Zinc Finger 35 100 - -
Cme12g01807 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cme12g01807 426 MobiDBLite consensus disorder prediction 307 332 - -
Cme12g01807 426 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cme12g01807 426 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01807 Cme-Chr12:24542528 Cme12g02049 Cme-Chr12:25956162 4.18E-163 dispersed
Cme12g01807 Cme-Chr12:24542528 Cme03g01971 Cme-Chr3:27590275 8.69E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42369 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01807 K25871 - csv:101210748 726.087