Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01812 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGCCTTCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCCGCTCCCCCCGCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGAAAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACCGATTCTCCTTATGTCGTTCAGTGTCATGGAATCTTCGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAACGACGCTTGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCCAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAATGGTTATGCCGGAGATATTTGGAGTTTGGGGCTTACTCTTCTAGAACTTTATTTAGGTCATTTTCCATTTCTTCCGGCTGGACAGAGACCGGATTGGGCAACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTACCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGTCGGATAATCGATGA 966 50.0 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLEKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSETTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSSDNR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24587517 24588786 + MELO3C002150.2.1 Cme12g01812 345029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01812 321 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Cme12g01812 321 MobiDBLite consensus disorder prediction 23 44 - -
Cme12g01812 321 MobiDBLite consensus disorder prediction 23 37 - -
Cme12g01812 321 Pfam Protein kinase domain 49 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cme12g01812 321 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Cme12g01812 321 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cme12g01812 321 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cme12g01812 321 CDD PKc_MAPKK_plant_like 47 309 - -
Cme12g01812 321 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cme12g01812 321 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01310 Cme-Chr4:18460759 Cme12g01812 Cme-Chr12:24587517 7.17E-99 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme07g00580 Cme-Chr7:4976665 3.37E-40 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme05g02055 Cme-Chr5:28855837 2.83E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65348 PF00069 Pkinase 4.60E-66 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01812 K20604 - csv:101203133 610.527