Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01812 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGCCTTCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCCGCTCCCCCCGCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGAAAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACCGATTCTCCTTATGTCGTTCAGTGTCATGGAATCTTCGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAACGACGCTTGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCCAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAATGGTTATGCCGGAGATATTTGGAGTTTGGGGCTTACTCTTCTAGAACTTTATTTAGGTCATTTTCCATTTCTTCCGGCTGGACAGAGACCGGATTGGGCAACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTACCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGTCGGATAATCGATGA 966 50.0 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLEKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSETTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSSDNR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24587517 24588786 + MELO3C002150.2.1 Cme12g01812 345029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01812 321 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Cme12g01812 321 MobiDBLite consensus disorder prediction 23 44 - -
Cme12g01812 321 MobiDBLite consensus disorder prediction 23 37 - -
Cme12g01812 321 Pfam Protein kinase domain 49 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cme12g01812 321 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Cme12g01812 321 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cme12g01812 321 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01812 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cme12g01812 321 CDD PKc_MAPKK_plant_like 47 309 - -
Cme12g01812 321 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cme12g01812 321 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01812 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 610.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01310 Cme-Chr4:18460759 Cme12g01812 Cme-Chr12:24587517 7.17E-99 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme07g00580 Cme-Chr7:4976665 3.37E-40 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme05g02055 Cme-Chr5:28855837 2.83E-78 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00272 CCT 28 338 MAP Kinase Kinase Gene Family AT4G26070 67.8 8.9e-127 450.3
Cme05g02055 CCT 7 303 MAP Kinase Kinase Gene Family AT4G26070 67.1 1.2e-115 413.3
Cme05g02012 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 55.3 1.6e-107 386.3
Cme02g00272 CCT 1 311 MAP Kinase Kinase Gene Family AT4G29810 67.8 2.6e-126 448.7
Cme05g02012 . 12 326 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.6e-110 395.6
Cme05g02055 CCT 9 277 MAP Kinase Kinase Gene Family AT4G29810 66.7 1.1e-105 380.2
Cme04g01845 . 115 599 MAP Kinase Kinase Gene Family AT5G40440 78.8 6.6e-227 783.5
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.7 2.4e-130 462.2
Cme12g01812 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 1.6e-84 310.1
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 68.7 1.5e-129 459.5
Cme12g01812 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.0 5.1e-85 311.6
Cme05g02012 . 3 356 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-171 596.7
Cme02g00272 CCT 7 337 MAP Kinase Kinase Gene Family AT5G56580 55.9 2.3e-109 392.5
Cme05g02055 CCT 14 292 MAP Kinase Kinase Gene Family AT5G56580 59.8 2.4e-98 355.9
Cme12g01812 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.9 4.4e-109 391.3
Cme04g01310 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.7e-76 283.1
Cme12g01812 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.3e-81 300.1
Cme12g01812 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 4.6e-114 407.9
Cme04g01310 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 3.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65348 PF00069 Pkinase 4.60E-66 CL0016 Cme PK