Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01812 | ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGCCTTCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCCGCTCCCCCCGCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGAAAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACCGATTCTCCTTATGTCGTTCAGTGTCATGGAATCTTCGAGAAACCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCGACTTTGTCTGAAACGACGCTTGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCATCGTGATATTAAACCGTCCAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAATGGTTATGCCGGAGATATTTGGAGTTTGGGGCTTACTCTTCTAGAACTTTATTTAGGTCATTTTCCATTTCTTCCGGCTGGACAGAGACCGGATTGGGCAACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGAAGCTACCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGTCGGATAATCGATGA | 966 | 50.0 | MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLEKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSETTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPKLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSSDNR | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 24587517 | 24588786 | + | MELO3C002150.2.1 | Cme12g01812 | 345029 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01812 | 321 | Gene3D | Phosphorylase Kinase; domain 1 | 36 | 128 | - | - | |
Cme12g01812 | 321 | MobiDBLite | consensus disorder prediction | 23 | 44 | - | - | |
Cme12g01812 | 321 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Cme12g01812 | 321 | Pfam | Protein kinase domain | 49 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01812 | 321 | ProSiteProfiles | Protein kinase domain profile. | 48 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01812 | 321 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 5 | 316 | - | - | |
Cme12g01812 | 321 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 77 | IPR017441 | GO:0005524 | |
Cme12g01812 | 321 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 311 | IPR011009 | - | |
Cme12g01812 | 321 | SMART | serkin_6 | 48 | 309 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01812 | 321 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672|GO:0006468 | |
Cme12g01812 | 321 | CDD | PKc_MAPKK_plant_like | 47 | 309 | - | - | |
Cme12g01812 | 321 | PANTHER | SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED | 5 | 316 | - | - | |
Cme12g01812 | 321 | Gene3D | Transferase(Phosphotransferase) domain 1 | 130 | 320 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01310 | Cme-Chr4:18460759 | Cme12g01812 | Cme-Chr12:24587517 | 7.17E-99 | dispersed | |
Cme12g01812 | Cme-Chr12:24587517 | Cme07g00580 | Cme-Chr7:4976665 | 3.37E-40 | dispersed | |
Cme12g01812 | Cme-Chr12:24587517 | Cme05g02055 | Cme-Chr5:28855837 | 2.83E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65348 | PF00069 | Pkinase | 4.60E-66 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01812 | K20604 | - | csv:101203133 | 610.527 |