Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01818 ATGCAAACCCAGATGGGAATTCGTTTCTTCTCTTTGTTTCTTCTCGGATTCTCTATTTTACTCTCCACTGTGAAGCCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCTGCTGTGGGTGGCCGGACTCTTATCCTCTGGAATGTGACTGATCAGAACACCTGTTCTTGGCCTGGGATTCAATGTGAGGACAATCGTGTCACTGTTCTTCGTCTCCCCGGAGCGGCGCTTTTCGGTCCATTGCCGGTTGGGATTTTTGGGAACTTGACGCACCTGCGTACTCTTAGCCTTCGACTCAATGCACTTTCCGGTCAGCTCCCGTCAGATCTCTCTGCCTGCATTAATCTTCGGAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTTATTCCTGATTTCTTGTTCCAGCTTCCTGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTTCTGGGTTCAACAATTTGACCCGTCTCAAGACTCTGTTCCTTGAGAAAAATCATCTCTCTGGGTCTATCCCGGACTTGAAGATCCATCTGGATCAGTTTAACGTTTCTAACAATCAGTTAAATGGGTCGGTTCCTAAGGGATTGCAGTCGTTTTCTTCGAGTTCCTTTTTGGGGAATTCTCTCTGCGGGGGTCCTCTTGAAGCTTGCTCTGGTGATCTTGTTGTGCCGACAGGGGAGGTTGGCAACAATGGCGGCTCTGGACACAAGAAAAAGCTGGCAGGGGGAGCCATTGCTGGGATTGTAATTGGATCTGTACTTGGTTTTGTGTTGATTCTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTGTTAAGAAAACAAGTTCAGTCGATGTAGCCACAGTGAAGCATCCTGAAGTGGAAATTCAGGGCAGTAAGCCACCTGGTGAGATTGAAAATGGGGGTTACAGTAATGGTTATACCGTGCCAGCCACTGCTGCTGCAGCTTCTGCTGCGACGGTAACGGCCGGGACTGCAAAAGGGGAAGTGAATGCCAATGGTACTGGGACTAAAAAATTGGTGTTCTTTGGTAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCTGAAGTGTTGGGGAAGGGAACCTTTGGGACTGCTTACAAAGCTGTTTTGGAAGTGGGTTCTGTTGTGGCCGTGAAGAGGTTGAAGGATGTTACCATAACAGAGAGGGAATTTAGAGAGAAGATTGAAGCTGTTGGATCCATGGATCATGAAAACTTGGTCCCTCTCAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGTTTATCTGCTCTTTTACATGGAAACAAAGGCGCTGGTAGGACTCCATTGAATTGGGAAATCAGGTCCGGAATTGCCCTTGGAGCTGCGCGTGGCATTGAATATCTCCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCTTCCAATATTCTTCTAACAAAATCTTATGATGCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCACCCCCACCAGAGTTGCTGGTTACCGTGCACCGGAGGTCACCGATCCCCGTAAAGTATCCCACAAGGCTGATGTCTATAGCTTTGGCGTATTGCTTTTGGAGCTTTTGACAGGAAAGGCCCCTACACATTCCCTTTTAAACGAGGAAGGAGTTGATCTACCTAGATGGGTGCAGTCAGTAGTTAGGGAGGAGTGGACTTCTGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTTGAGGAGGAGATGGTTCAACTATTGCAACTTGCAGTCGATTGCGCAGCTCAGTATCCTGATAAGCGTCCTACAATGTCGGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTTCACGAAGCTGTCAATCCACAACCCGACGCTGCTCAAGATTCAGACGAGGCATCTTCTAGGTGA 1989 47.11 MQTQMGIRFFSLFLLGFSILLSTVKPDLASDRTALLALRSAVGGRTLILWNVTDQNTCSWPGIQCEDNRVTVLRLPGAALFGPLPVGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGLIPDFLFQLPDLVRLNLASNNFSGEISSGFNNLTRLKTLFLEKNHLSGSIPDLKIHLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGGPLEACSGDLVVPTGEVGNNGGSGHKKKLAGGAIAGIVIGSVLGFVLILVILMLLCRKKSVKKTSSVDVATVKHPEVEIQGSKPPGEIENGGYSNGYTVPATAAAASAATVTAGTAKGEVNANGTGTKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPPSTPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMSEVTKRIEELRQSSLHEAVNPQPDAAQDSDEASSR 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24622113 24625399 + MELO3C002144.2.1 Cme12g01818 345035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01818 662 Pfam Protein kinase domain 371 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01818 662 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Cme12g01818 662 PANTHER INACTIVE RECEPTOR KINASE-RELATED 13 657 - -
Cme12g01818 662 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01818 662 Gene3D Transferase(Phosphotransferase) domain 1 443 659 - -
Cme12g01818 662 MobiDBLite consensus disorder prediction 638 662 - -
Cme12g01818 662 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Cme12g01818 662 PANTHER OS05G0588300 PROTEIN 13 657 - -
Cme12g01818 662 MobiDBLite consensus disorder prediction 642 662 - -
Cme12g01818 662 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cme12g01818 662 SUPERFAMILY Protein kinase-like (PK-like) 372 634 IPR011009 -
Cme12g01818 662 Gene3D Ribonuclease Inhibitor 187 230 IPR032675 -
Cme12g01818 662 Gene3D Phosphorylase Kinase; domain 1 335 442 - -
Cme12g01818 662 SUPERFAMILY L domain-like 30 211 - -
Cme12g01818 662 CDD STKc_IRAK 374 637 - -
Cme12g01818 662 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01547 Cme-Chr6:15328506 Cme12g01818 Cme-Chr12:24622113 0 dispersed
Cme09g01035 Cme-Chr9:14481537 Cme12g01818 Cme-Chr12:24622113 0 dispersed
Cme11g01678 Cme-Chr11:24777222 Cme12g01818 Cme-Chr12:24622113 2.57E-176 dispersed
Cme12g01818 Cme-Chr12:24622113 Cme05g01954 Cme-Chr5:28090976 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65349 PF00069 Pkinase 2.60E-39 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01818 - - csv:101222458 1211.44