Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01827 TCATCAAAGATCTTTCTCTTAATTCCACATACCCTTCATCTTCTTCATCTTCTTCGTCTTCTTCGTCTTCTTCGTCTTCTTTTCTTATTATTCTTCAAGAACTCAATCAAAATTCATATTATAATGCAATTGGAAACTCGTAGAGTTCAATTAATTTTCTTAATTTTATGTCTATCTTCTCTCTTCATCAACGCCCGTCCCTTTCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGCGCCCCACCGGACGACTCCTCCGATTCCGCCAACTCCGATTCCGCCGACTGGGACGAGTTCGGTGAACCCGAATCTCAAAATTCCGCCTTGGAACTGGACCCCGGTTCTTGGCGCCCTATTTTTGAACCGGATTCTCTCGCCTCCGCATCCGACTCCGACGCGCCCCAGGATCTGTACTACACTGCTTTAGGGAAAATGATGTCTGCGGTTAGCTCTGGTGACCTGAGGTTGATGGAAGATGCGGTAGCGGATATTGATCAAGCTGTTGCGGATAATGGGGATCCGCACGCGCAATCGGTTCTAGGGTTGTTGTATGGAATGGGGATAATGAAGGAAACCAATAAGGCTAAGGCATTTATGTATCATCATTTTGCTGCTGAGGGGAATAAGCAATCTAAGATGGCTCTTGCTTACATTTACTTCAGGCAAGAAATGTATGAGAAAGCAGTCAAGCTTTATGCTGAATTAGCGGAGGTAGCTATCAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTAAGGATCCATAATGGAGCTGAGGAGAATAAGCAGGCCTTGAGAAAGTCTCGAGGAGAAGAGGATGAGGACTTCCAAATTTTGGAGTATCAGGCGCAGAAGGGCAATGCTGGAGCTATGTATAGAATTGGGCTATTTTACTACTTTGGACTTAGAGGGTTGAGGCGTGATCATGCTAAAGCATTGTCCTGGTTTTCCAAGGCCGTGGAGAAAGGTGAACCAAAGTCTATGGAATTACTTGGAGAGATATATGCAAGGGGGGCAGGAGTCGAAAGGGATTACACCAAGGCACTTCAATGGCTAACTCGTGCATCCAAGCAGCCGTCATTTACTGCCTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTATACCAAGGCCAAGGAATACTTTGAGAAAGCTGCCGAAAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGCATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAATGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACGGGTGTTGGGCTCAAGAGGAATATTCCAATGGCTAGTGCATTGTATAAATTAGTTGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCAAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTTGGAGAATCGGGCTTTTGCACGGATGCAGAAAGACATCAGAGAGCTCATTCTCTATGGTGGCAAGCTTCCGAGCAGGGCAATGAACATGCTGCATTACTTATTGGGGATGCATATTACTACGGGCGGGGAACTGACGTAGATTATGATCGTGCTGCGGAAGCATACATGCATGCTAAATCCCAACTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTTGGCCTTCCATTTGATCTCCACCTAGCTAAGCGTTACTATGACCAAGCTTTGGAACTTGATCCAGCCGCCAGGTTGCCTGTCAAGTTGGCCCTAGTAAGCCTTTGGTTAAGAAAGAATCATGCTGACAGTTTTCTGGTACATGTGATTGATTCATTGCCAGAAGTGTATCCAAAAATTGATGCATGGGTAGAGGATGTACTGTTGGAGGAAGGAAACGCAACAATTCTAACTCTATTTGCTTGCCTTCTCACTGTCCTATATCTTAGAGAGCGACAACGGAGGCAGGCAGCTGTTCGGGCTGCTGCCGCTGCGGCTGAGGCTGTGCCGCCACTCCATCCAAATGACCATTTGCCTCCGCAAAATTAA 2175 45.01 SSKIFLLIPHTLHLLHLLRLLRLLRLLFLLFFKNSIKIHIIMQLETRRVQLIFLILCLSSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSADWDEFGEPESQNSALELDPGSWRPIFEPDSLASASDSDAPQDLYYTALGKMMSAVSSGDLRLMEDAVADIDQAVADNGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEGNKQSKMALAYIYFRQEMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEKNYTKAKEYFEKAAENDESGGHYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADSFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRQAAVRAAAAAAEAVPPLHPNDHLPPQN 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24664692 24668686 + MELO3C002135.2.1 Cme12g01827 345044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01827 724 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 45 704 - -
Cme12g01827 724 Pfam Sel1 repeat 589 623 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 367 399 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 293 327 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 404 435 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 555 577 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 330 363 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 441 471 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 175 208 IPR006597 -
Cme12g01827 724 Pfam Sel1 repeat 486 504 IPR006597 -
Cme12g01827 724 Gene3D Tetratricopeptide repeat domain 260 644 IPR011990 GO:0005515
Cme12g01827 724 SMART sel1 437 472 IPR006597 -
Cme12g01827 724 SMART sel1 329 364 IPR006597 -
Cme12g01827 724 SMART sel1 292 328 IPR006597 -
Cme12g01827 724 SMART sel1 401 436 IPR006597 -
Cme12g01827 724 SMART sel1 589 624 IPR006597 -
Cme12g01827 724 SMART sel1 553 588 IPR006597 -
Cme12g01827 724 SMART sel1 175 210 IPR006597 -
Cme12g01827 724 SMART sel1 365 400 IPR006597 -
Cme12g01827 724 SUPERFAMILY HCP-like 378 625 - -
Cme12g01827 724 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 45 704 IPR044623 GO:0030433
Cme12g01827 724 SUPERFAMILY HCP-like 159 238 - -
Cme12g01827 724 SUPERFAMILY HCP-like 273 408 - -
Cme12g01827 724 MobiDBLite consensus disorder prediction 80 114 - -
Cme12g01827 724 Gene3D Tetratricopeptide repeat domain 140 249 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01827 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1277.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38