Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g01829 | ATGGGGGATTCACCAAAAAGCCCAGAGAGCGGCAGCGGCGGCGGCGGTGGTGGTAGTAGTGGGGGAGGGCGTTGTTCGTCGTCGTTGATGGAAAGCTTGTTGGGTCTTCTTCGGATTCGGATCATTCGCGGCGTCAACCTCGCCGTTCGTGACGTCCGTAGCAGCGATCCTTATATTGTTGTTAAAATGTCTAAACAGAAATTAAAGACTCGTGTGATTAAGAAGGACATAAATCCAGAATGGAACGAAGACCTTACTTTATCTGTTACAGATCCCAACGCTTTAGTCAAACTGACGGTGTACGACCATGACACATTCAGTATGGACGACAAGATGGGCGACGCAGAGTTCGAGATAGGGCCATATATTGAAGCATTAAAGATGGATCTATCAGGGTTACCGAGTGGAACGATAGTGTCAAGAGTGCAACCAAGTAGGCAAAATTGTCTGGCAGAAGAGAGTGGGATTGTGTGGGTAGAAGGCAAAGTTGTTCAAAACATTTGTCTACGATTGCGCAATGTCGAATGTGGAGAACTCGAAATCCAATTGCAATGGATTGATCTTCCTGGTTCTAAAGGTTTGTAA | 585 | 46.5 | MGDSPKSPESGSGGGGGGSSGGGRCSSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTDPNALVKLTVYDHDTFSMDDKMGDAEFEIGPYIEALKMDLSGLPSGTIVSRVQPSRQNCLAEESGIVWVEGKVVQNICLRLRNVECGELEIQLQWIDLPGSKGL | 194 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 24675963 | 24677437 | - | MELO3C002133.2.1 | Cme12g01829 | 345046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g01829 | 194 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cme12g01829 | 194 | ProSiteProfiles | C2 domain profile. | 18 | 135 | IPR000008 | - | |
| Cme12g01829 | 194 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 22 | 193 | IPR044562 | - | |
| Cme12g01829 | 194 | SMART | C2_3c | 36 | 131 | IPR000008 | - | |
| Cme12g01829 | 194 | Pfam | C2 domain | 35 | 121 | IPR000008 | - | |
| Cme12g01829 | 194 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 31 | 187 | IPR035892 | - | |
| Cme12g01829 | 194 | Gene3D | C2 domain | 31 | 192 | IPR035892 | - | |
| Cme12g01829 | 194 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 22 | 193 | - | - | |
| Cme12g01829 | 194 | CDD | C2_ArfGAP | 34 | 177 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme12g00824 | Cme-Chr12:14908072 | Cme12g01829 | Cme-Chr12:24675963 | 6.89E-41 | dispersed | |
| Cme12g01105 | Cme-Chr12:18945352 | Cme12g01829 | Cme-Chr12:24675963 | 9.29E-37 | dispersed | |
| Cme06g01517 | Cme-Chr6:14634544 | Cme12g01829 | Cme-Chr12:24675963 | 6.43E-86 | transposed | |
| Cme08g01030 | Cme-Chr8:6671454 | Cme12g01829 | Cme-Chr12:24675963 | 6.98E-42 | transposed | |
| Cme09g01378 | Cme-Chr9:19034438 | Cme12g01829 | Cme-Chr12:24675963 | 3.27E-72 | transposed | |
| Cme10g01584 | Cme-Chr10:20916516 | Cme12g01829 | Cme-Chr12:24675963 | 2.27E-64 | transposed | |
| Cme12g01829 | Cme-Chr12:24675963 | Cme02g01681 | Cme-Chr2:23935345 | 5.07E-98 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g01829 | - | - | cmo:103502345 | 352.829 |