Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01832 ATGCGTGAGATTCTTCACATCCAAGGAGGGCAATGTGGGAACCAAATTGGCTCCAAGTTCTGGGAGGTCGTCTGCGACGAGCACGGCATCGACCCCACCGGCAGGTATGCTGGAAATTCAGAATTGCAGTTGGAGAGAGCGAATGTGTATTACAATGAAGCGAGTGGAGGAAGGTATGTGCCAAGGGCGGTGCTGATGGACCTCGAACCAGGGACGATGGATGCCGTTAGGACGGGTCCATACGGGCAGATTTTCCGACCAGATAATTTCGTGTTCGGGCAATCGGGTGCTGGTAACAATTGGGCTAAAGGGCATTACACTGAAGGTGCAGAGCTGATTGATTCAGTGCTTGATGTTGTCAGGAAAGAAGCTGAGAATTGTGATTCTCTTCAAGGGTTTCAAGTGTGTCATTCACTTGGAGGTGGAACAGGATCAGGAATGGGGACTCTTCTAATCTCCAAGATCAGGGAAGAATATCCAGATAGAATGATGTTAACTTTCTCTGTGTTTCCATCTCCAAAGGTTTCCGACACTGTTGTAGAGCCATACAATGCTACTCTTTCGGTACATCAATTGGTAGAGAATGCTGATGAATGTATGGTACTTGACAATGAAGCACTCTATGACATCTGTTTTAGGACTCTAAAACTCACAACCCCAATTGGAGATTTGAACCATCTAATTTCAGCAACAATGAGTGGAGTTACATGTTGTTTGAGATTCCCCGGCCAACTGAATTCCGACCTCCGAAAACTGGCTGTGAACTTAATCCCTTTCCCTCGACTTCACTTCTTCATGGTTGGGTTCGCACCTTTGACCTCTCGTGGATCACAGCAGTACAGAGCACTGACTGTTCCTGAACTGACACAACAAATGTGGGATGCTAAGAACATGATGTGTGCAGCCGATCCACGCCACGGTCGATATCTTACAGCATCTGCAATGTTCCGAGGTAAAATGAGTACGAAAGAAGTCGACGAGCAGATGATGAATGTGCAGAACAAAAACTCTTCTTATTTTGTGGAATGGATTCCAAACAATGTGAAATCTAGTGTTTGTGATATTCCACCTAAAGGGTTCCCAATGGCTTCCACTTTTGTTGGAAACTCAACTTCAATTCAGGAGATGTTTAGAAGAGTGAGTGAGCAATTCACAGCCATGTTTAGAAGGAAGGCTTTCTTGCATTGGTATACTGGAGAGGGAATGGATGAGATGGAGTTTACTGAAGCAGAAAGCAATATGAATGATCTTGTTGCTGAGTATCAACAATATCAAGATGCCACGGCTGATGAAGATCTTGACTATGAAGATGATGGTGGGGACACCGAAAACTGA 1335 45.09 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGNSELQLERANVYYNEASGGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPIGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPKGFPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDLDYEDDGGDTEN 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24703109 24706679 - MELO3C002130.2.1 Cme12g01832 345049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01832 444 Gene3D Helix hairpin bin 373 429 IPR023123 -
Cme12g01832 444 Pfam Tubulin C-terminal domain 260 381 IPR018316 -
Cme12g01832 444 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 242 IPR036525 -
Cme12g01832 444 Coils Coil 407 427 - -
Cme12g01832 444 PANTHER TUBULIN 1 436 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 SUPERFAMILY Tubulin C-terminal domain-like 243 428 IPR008280 -
Cme12g01832 444 CDD beta_tubulin 2 425 - -
Cme12g01832 444 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 Gene3D Tubulin/FtsZ, GTPase domain 1 261 IPR036525 -
Cme12g01832 444 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cme12g01832 444 PRINTS Beta-tubulin signature 310 328 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 328 342 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 411 429 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 376 387 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 346 369 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 264 280 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 244 257 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Beta-tubulin signature 229 238 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cme12g01832 444 SMART Tubulin_C_4 245 382 IPR018316 -
Cme12g01832 444 Gene3D - 262 372 IPR037103 -
Cme12g01832 444 SMART Tubulin_4 47 243 IPR003008 GO:0005525
Cme12g01832 444 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Cme12g01832 444 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 369 397 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Cme12g01832 444 PANTHER TUBULIN BETA-6 CHAIN 1 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01832 K07375 TUBB; tubulin beta - csv:101220108 880.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02211 Cme-Chr7:26332840 Cme12g01832 Cme-Chr12:24703109 4.23E-125 dispersed
Cme12g01071 Cme-Chr12:18608864 Cme12g01832 Cme-Chr12:24703109 0 dispersed
Cme12g01832 Cme-Chr12:24703109 Cme04g02679 Cme-Chr4:32375590 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220