Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01833 ATGTGGATGATGGGTTACAATGACGCTCAAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCTTCCTCTCACACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCTTCGCCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGGACTCGAACCCCTTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCCTCAGCCATTACTACTGCCGACCACTCGGCTCGTGACCTCGACGTCCTCGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAGGCAATGTAATGGGGGCAACAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAAGAATTGCACCAAATAAGAAATAACAACACCAACACCAACAACTTTGCTGAAAAGGATACAAATAACATCATCATCATCAACAACAACAACAACAACAACATTAACAATCCACCCTCTTTGCAATTGTTGCATTGTTTTCCGGCAACCACTGCTCTCCGTGGTGGTAGCCAACTAATGATGAACATTGCCCCTATCACAACTACAGCCACAGTGACAACAATAATGCACCCAAAATGTCATAGAAGAAGTAATTTTGATGTTATTGGAGTTGAAGAAGAATTAGAAGATGAAGAAGAAGAAGAAGAATGTGGGGAATCTGAAACCCTACAACTATTTCCATTGTGCAGTGATAGAAGAAATGGTGGAGAGATTATTGGAGGCAAAAATAATAATGGATGTGAAACAGTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTACCATTGAAGAATTAA 1146 42.76 MWMMGYNDAQDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSHTNDFFSQFHHMATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSARDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQGAAKGNVMGATDCRTENGWIQFEELHQIRNNNTNTNNFAEKDTNNIIIINNNNNNNINNPPSLQLLHCFPATTALRGGSQLMMNIAPITTTATVTTIMHPKCHRRSNFDVIGVEEELEDEEEEEECGESETLQLFPLCSDRRNGGEIIGGKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24715249 24718109 + MELO3C002129.2.1 Cme12g01833 345050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01833 381 SMART HOX_1 77 144 IPR001356 GO:0003677
Cme12g01833 381 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Cme12g01833 381 CDD homeodomain 81 141 IPR001356 GO:0003677
Cme12g01833 381 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 381 IPR044555 GO:0003700|GO:0099402
Cme12g01833 381 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Cme12g01833 381 Coils Coil 309 329 - -
Cme12g01833 381 Gene3D - 79 146 - -
Cme12g01833 381 Pfam Homeodomain 80 139 IPR001356 GO:0003677
Cme12g01833 381 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01833 - - - csv:101209268 636.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01686 Cme12g01833 CCT
Cme02g01686 Cme12g01833 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02065 Cme-Chr3:28133933 Cme12g01833 Cme-Chr12:24715249 1.91E-27 dispersed
Cme08g00921 Cme-Chr8:6062201 Cme12g01833 Cme-Chr12:24715249 1.34E-08 dispersed
Cme03g00234 Cme-Chr3:3005566 Cme12g01833 Cme-Chr12:24715249 4.32E-27 transposed
Cme04g02188 Cme-Chr4:29130753 Cme12g01833 Cme-Chr12:24715249 2.54E-14 transposed
Cme07g00048 Cme-Chr7:304920 Cme12g01833 Cme-Chr12:24715249 2.82E-14 transposed
Cme08g00256 Cme-Chr8:1665495 Cme12g01833 Cme-Chr12:24715249 5.99E-16 transposed
Cme11g01740 Cme-Chr11:25576465 Cme12g01833 Cme-Chr12:24715249 5.78E-28 transposed
Cme12g01833 Cme-Chr12:24715249 Cme02g01686 Cme-Chr2:23977221 2.13E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42373 PF00046 Homeodomain 2.20E-19 CL0123 Cme TF