Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01833 ATGTGGATGATGGGTTACAATGACGCTCAAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCTTCCTCTCACACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCTTCGCCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGGACTCGAACCCCTTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCCTCAGCCATTACTACTGCCGACCACTCGGCTCGTGACCTCGACGTCCTCGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAGGCAATGTAATGGGGGCAACAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAAGAATTGCACCAAATAAGAAATAACAACACCAACACCAACAACTTTGCTGAAAAGGATACAAATAACATCATCATCATCAACAACAACAACAACAACAACATTAACAATCCACCCTCTTTGCAATTGTTGCATTGTTTTCCGGCAACCACTGCTCTCCGTGGTGGTAGCCAACTAATGATGAACATTGCCCCTATCACAACTACAGCCACAGTGACAACAATAATGCACCCAAAATGTCATAGAAGAAGTAATTTTGATGTTATTGGAGTTGAAGAAGAATTAGAAGATGAAGAAGAAGAAGAAGAATGTGGGGAATCTGAAACCCTACAACTATTTCCATTGTGCAGTGATAGAAGAAATGGTGGAGAGATTATTGGAGGCAAAAATAATAATGGATGTGAAACAGTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTACCATTGAAGAATTAA 1146 42.76 MWMMGYNDAQDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSHTNDFFSQFHHMATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSARDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQGAAKGNVMGATDCRTENGWIQFEELHQIRNNNTNTNNFAEKDTNNIIIINNNNNNNINNPPSLQLLHCFPATTALRGGSQLMMNIAPITTTATVTTIMHPKCHRRSNFDVIGVEEELEDEEEEEECGESETLQLFPLCSDRRNGGEIIGGKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24715249 24718109 + MELO3C002129.2.1 Cme12g01833 345050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01833 381 SMART HOX_1 77 144 IPR001356 GO:0003677
Cme12g01833 381 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677
Cme12g01833 381 CDD homeodomain 81 141 IPR001356 GO:0003677
Cme12g01833 381 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 381 IPR044555 GO:0003700|GO:0099402
Cme12g01833 381 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Cme12g01833 381 Coils Coil 309 329 - -
Cme12g01833 381 Gene3D - 79 146 - -
Cme12g01833 381 Pfam Homeodomain 80 139 IPR001356 GO:0003677
Cme12g01833 381 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 381 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01686 Cme12g01833 CCT
Cme02g01686 Cme12g01833 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02065 Cme-Chr3:28133933 Cme12g01833 Cme-Chr12:24715249 1.91E-27 dispersed
Cme08g00921 Cme-Chr8:6062201 Cme12g01833 Cme-Chr12:24715249 1.34E-08 dispersed
Cme03g00234 Cme-Chr3:3005566 Cme12g01833 Cme-Chr12:24715249 4.32E-27 transposed
Cme04g02188 Cme-Chr4:29130753 Cme12g01833 Cme-Chr12:24715249 2.54E-14 transposed
Cme07g00048 Cme-Chr7:304920 Cme12g01833 Cme-Chr12:24715249 2.82E-14 transposed
Cme08g00256 Cme-Chr8:1665495 Cme12g01833 Cme-Chr12:24715249 5.99E-16 transposed
Cme11g01740 Cme-Chr11:25576465 Cme12g01833 Cme-Chr12:24715249 5.78E-28 transposed
Cme12g01833 Cme-Chr12:24715249 Cme02g01686 Cme-Chr2:23977221 2.13E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42373 PF00046 Homeodomain 2.20E-19 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01833 - - csv:101209268 636.721