Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01833 | ATGTGGATGATGGGTTACAATGACGCTCAAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTCATTCCTCGCCCTCTCTCTTCTTCTTCTTCTTCCTCTCACACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGTCGGTGGCTGATCAAAGTAAGAGAGAGTTGAACAATGTGCTTTCACCATCTTCTTCGCCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCCGAACAGTTGAGAGTTTTGGAGGAATTGTATCGGCGAGGGACTCGAACCCCTTCGGCTGATCAAATTCAACATATTACTTCCCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAACCATAAAGCTAGAGAACGACAGAAACGTCGTCGACAAATGGAATCCTCAGCCATTACTACTGCCGACCACTCGGCTCGTGACCTCGACGTCCTCGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCTGAGGAATCTGTTCCAATTCAAGGGGCAGCAAAAGGCAATGTAATGGGGGCAACAGATTGCAGGACAGAAAATGGATGGATTCAATTTGAAGAATTGCACCAAATAAGAAATAACAACACCAACACCAACAACTTTGCTGAAAAGGATACAAATAACATCATCATCATCAACAACAACAACAACAACAACATTAACAATCCACCCTCTTTGCAATTGTTGCATTGTTTTCCGGCAACCACTGCTCTCCGTGGTGGTAGCCAACTAATGATGAACATTGCCCCTATCACAACTACAGCCACAGTGACAACAATAATGCACCCAAAATGTCATAGAAGAAGTAATTTTGATGTTATTGGAGTTGAAGAAGAATTAGAAGATGAAGAAGAAGAAGAAGAATGTGGGGAATCTGAAACCCTACAACTATTTCCATTGTGCAGTGATAGAAGAAATGGTGGAGAGATTATTGGAGGCAAAAATAATAATGGATGTGAAACAGTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTACCATTGAAGAATTAA | 1146 | 42.76 | MWMMGYNDAQDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSHTNDFFSQFHHMATSVADQSKRELNNVLSPSSSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESSAITTADHSARDLDVLERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQGAAKGNVMGATDCRTENGWIQFEELHQIRNNNTNTNNFAEKDTNNIIIINNNNNNNINNPPSLQLLHCFPATTALRGGSQLMMNIAPITTTATVTTIMHPKCHRRSNFDVIGVEEELEDEEEEEECGESETLQLFPLCSDRRNGGEIIGGKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 24715249 | 24718109 | + | MELO3C002129.2.1 | Cme12g01833 | 345050 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01833 | 381 | SMART | HOX_1 | 77 | 144 | IPR001356 | GO:0003677 | |
Cme12g01833 | 381 | ProSiteProfiles | 'Homeobox' domain profile. | 85 | 140 | IPR001356 | GO:0003677 | |
Cme12g01833 | 381 | CDD | homeodomain | 81 | 141 | IPR001356 | GO:0003677 | |
Cme12g01833 | 381 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 35 | 381 | IPR044555 | GO:0003700|GO:0099402 | |
Cme12g01833 | 381 | SUPERFAMILY | Homeodomain-like | 79 | 145 | IPR009057 | - | |
Cme12g01833 | 381 | Coils | Coil | 309 | 329 | - | - | |
Cme12g01833 | 381 | Gene3D | - | 79 | 146 | - | - | |
Cme12g01833 | 381 | Pfam | Homeodomain | 80 | 139 | IPR001356 | GO:0003677 | |
Cme12g01833 | 381 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 35 | 381 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01686 | Cme12g01833 | CCT | |
Cme02g01686 | Cme12g01833 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g02065 | Cme-Chr3:28133933 | Cme12g01833 | Cme-Chr12:24715249 | 1.91E-27 | dispersed | |
Cme08g00921 | Cme-Chr8:6062201 | Cme12g01833 | Cme-Chr12:24715249 | 1.34E-08 | dispersed | |
Cme03g00234 | Cme-Chr3:3005566 | Cme12g01833 | Cme-Chr12:24715249 | 4.32E-27 | transposed | |
Cme04g02188 | Cme-Chr4:29130753 | Cme12g01833 | Cme-Chr12:24715249 | 2.54E-14 | transposed | |
Cme07g00048 | Cme-Chr7:304920 | Cme12g01833 | Cme-Chr12:24715249 | 2.82E-14 | transposed | |
Cme08g00256 | Cme-Chr8:1665495 | Cme12g01833 | Cme-Chr12:24715249 | 5.99E-16 | transposed | |
Cme11g01740 | Cme-Chr11:25576465 | Cme12g01833 | Cme-Chr12:24715249 | 5.78E-28 | transposed | |
Cme12g01833 | Cme-Chr12:24715249 | Cme02g01686 | Cme-Chr2:23977221 | 2.13E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42373 | PF00046 | Homeodomain | 2.20E-19 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01833 | - | - | csv:101209268 | 636.721 |