Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01834 ATGATGAGAGTTTCTCTGAGGTCTCTTGTAGCTCTCACGCTCTACACTCTCTTCGCTTCCCACATTTCAGTTTTGGTCTCTGCCACTACAATAACACTCTACAACAAATGCTCTCATCCAGTTTGGCCTGGCATTCAGCCTAGCGCTGGTAAGCCCTTGTTGGCTCGTGGAGGCTTCAAGCTCCCACCCAACAAGGCTTACACTCTTCAACTTCCAGCCCTTTGGTCTGGTCGTTTCTGGGGCCGCCATGGCTGTGCTTTTGATGCATCTGGAAGAGGAAAGTGTGCTACAGGAGATTGTGGAGGTGCCCTCTTTTGCAATGGTATTGGAGGTACTCCACCAGCCACTCTTGCTGAGATAACACTTGGAAATGACCAAGATTTCTATGATGTGAGCCTTGTTGATGGCTACAATTTGGCTATTTCCATTACCCCATCTAAAGGCTCAGGGAAATGTAGTTATGCTGGCTGTGTGAGTGACCTTAACATGATGTGTCCTGTGGGCTTACAAGTTAGATCTCACGATAATAGAAGAGTTGTGGCTTGTAAAAGTGCTTGCTTTGCATTCAATTCTCCAAGGTATTGCTGCACTGGTAGGTTTGGGAATCCACAATCTTGCAAGCCAACTGCTTATTCAAAGATCTTTAAGACTGCTTGTCCCAAGGCTTACTCCTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACTGGTGGAAACTATTTGGTCACTTTTTGCCCTCATCACGGTTAG 753 46.35 MMRVSLRSLVALTLYTLFASHISVLVSATTITLYNKCSHPVWPGIQPSAGKPLLARGGFKLPPNKAYTLQLPALWSGRFWGRHGCAFDASGRGKCATGDCGGALFCNGIGGTPPATLAEITLGNDQDFYDVSLVDGYNLAISITPSKGSGKCSYAGCVSDLNMMCPVGLQVRSHDNRRVVACKSACFAFNSPRYCCTGRFGNPQSCKPTAYSKIFKTACPKAYSYAYDDPTSIATCTGGNYLVTFCPHHG 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24724103 24725546 + MELO3C002128.2.1 Cme12g01834 345051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01834 250 PIRSF PR5 1 250 IPR001938 -
Cme12g01834 250 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Cme12g01834 250 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Cme12g01834 250 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Cme12g01834 250 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Cme12g01834 250 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cme12g01834 250 PANTHER OS03G0233200 PROTEIN 9 249 IPR001938 -
Cme12g01834 250 Pfam Thaumatin family 35 247 IPR001938 -
Cme12g01834 250 Gene3D Thaumatin 29 247 IPR037176 -
Cme12g01834 250 CDD TLP-PA 30 246 - -
Cme12g01834 250 SUPERFAMILY Osmotin, thaumatin-like protein 29 248 IPR037176 -
Cme12g01834 250 ProSitePatterns Thaumatin family signature. 91 106 IPR017949 -
Cme12g01834 250 PANTHER THAUMATIN-LIKE PROTEIN 9 249 - -
Cme12g01834 250 ProSiteProfiles Thaumatin family profile. 28 249 IPR001938 -
Cme12g01834 250 SMART tha2 31 247 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01834 - - - csv:101219392 524.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02489 Cme-Chr1:32960151 Cme12g01834 Cme-Chr12:24724103 5.71E-95 dispersed
Cme08g02422 Cme-Chr8:31077048 Cme12g01834 Cme-Chr12:24724103 3.81E-78 dispersed
Cme12g00206 Cme-Chr12:2137387 Cme12g01834 Cme-Chr12:24724103 4.63E-63 dispersed
Cme12g01834 Cme-Chr12:24724103 Cme08g00938 Cme-Chr8:6173985 1.27E-86 dispersed
Cme12g01834 Cme-Chr12:24724103 Cme06g02378 Cme-Chr6:30996366 1.67E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67