Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01838 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGTAGCTGAAGGGTCTACTTCATCGAGGAGCAATAAGGTAATGGAGGTTTCATCGCCTGATAAGCTGCCATCTCGCTCCCGACCGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGAATATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCGGATCCTACTGCTGGCGAGATAATGGAGCCATCGGATTCAGTGTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAATTCGAGGGATCCCGATATAGAAGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTCGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCCGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGGATCCACTTCAGAAAGAATGCCCTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATAAATAAAGCTGCTGATGCTAACTTATTGAAACTCGAACAGACAGCATTGGAGATGGCTATCAAGATGCGGACAGAGTCTCCAATTTCTGTAAATAGTTATTTGGTGCGGAAACTTGCTGCTTTAGTTTCAGATCATATGGGGGGACCAGTGGGTGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTTGGGTTGGCCCGTCATCGTGCATTATTATTCAAGTTTTTGGCAGATGGCGTGGGTGTTCCTTGTAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGATGTGGCAATGAACTTTGTAAAGATTGACGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCGGCCAGTCCAGTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGGCCCACAATCTCAGTGCCACAAAGGAATACGATTCTCCCAATATCGACAAGGTCCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACACTAGATCACCATCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAGTACATGATTGATGCTGCCAAAGAGAATCCACGGTTAGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGCGTAGTTGCTCCCCCAAACTTGTTTACCGAGGCATACCCTGACCAAATAGATGTTATTGTCGAGTCTAAGTCACCAACTGAAGACAAGGATCAAAGTAGAAAGCTGCCTGCTATCTGTGAAAGTGCCGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGACCGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACATTAAACCTCTGGAATTCAACCTTTCTCTTGATTCAAGAGAAGCAGGCGGACAACCTATACCCTTACCATTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGCAGCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACTGCAACCGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTGCTCTTTATGAGCTGCGTGGAAGTGGAGATAGGGAGCAGGATGCCTGTGGAGACAATTCAGAGGGTGAACGTATATCAGATAGATCAGCTGGTAACGAAAGCACAAAATCTGATATTACCCTTGATGATGTTGCAGAATGTGAGATCCCATGGGAAGAAATTTCCTTGGGAGAGCGTATTGGACTTGGATCATATGGGGAGGTCTATCGTGGAGACTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGATCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAACGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCATCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCGCTTGATGCAGCTCGGGGAATGAATTATTTGCACAACTGCACGCCTGTTGTTGTACATCGTGATTTGAAGTCTCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTGTGCGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACTGCTGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCCGATGAAAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTATCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTGGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCGTTTGCTGAGATTATGGCTGCTTTAAAGCCGCTGCAAAAGCCATTGTCGAGTTCTCAAGTACCAAGACCAAATGCTCCTGCAGGTAGTGGTCGTGACAAGGCTAGATTATTGCAAGTCAGCGAAGACCCATCAGGCTAG 3036 45.88 MKNLLKKFHIMSSGQSDDVAEGSTSSRSNKVMEVSSPDKLPSRSRPTHFNSEHKPFSGISGWLNSVTNRRSPSPPSSSDPTAGEIMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTGSTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMRTESPISVNSYLVRKLAALVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKFLADGVGVPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPVSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKAHNLSATKEYDSPNIDKVPSRDFASKSNYPGMHTRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKLPAICESADKNDPRPANFLPPLPQPRPHSRASPTHGQQLHIKPLEFNLSLDSREAGGQPIPLPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSSDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYELRGSGDREQDACGDNSEGERISDRSAGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPLSSSQVPRPNAPAGSGRDKARLLQVSEDPSG 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24732892 24744365 - MELO3C002125.2.1 Cme12g01838 345055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01838 1011 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 1009 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 676 705 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 51 88 - -
Cme12g01838 1011 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01838 1011 SMART serkin_6 722 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01838 1011 MobiDBLite consensus disorder prediction 97 116 - -
Cme12g01838 1011 Gene3D Transferase(Phosphotransferase) domain 1 801 985 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 978 1011 - -
Cme12g01838 1011 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524
Cme12g01838 1011 MobiDBLite consensus disorder prediction 1 116 - -
Cme12g01838 1011 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 1009 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 16 44 - -
Cme12g01838 1011 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 MobiDBLite consensus disorder prediction 537 568 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 380 406 - -
Cme12g01838 1011 SUPERFAMILY Protein kinase-like (PK-like) 705 972 IPR011009 -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 676 699 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 442 458 - -
Cme12g01838 1011 MobiDBLite consensus disorder prediction 377 459 - -
Cme12g01838 1011 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Cme12g01838 1011 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Cme12g01838 1011 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672|GO:0006468
Cme12g01838 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Cme12g01838 1011 CDD STKc_MAP3K-like 728 974 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00228 Cme-Chr7:1500074 Cme12g01838 Cme-Chr12:24732892 5.35E-82 dispersed
Cme08g01227 Cme-Chr8:8661616 Cme12g01838 Cme-Chr12:24732892 1.78E-35 dispersed
Cme11g01134 Cme-Chr11:17137716 Cme12g01838 Cme-Chr12:24732892 4.83E-09 dispersed
Cme11g02082 Cme-Chr11:28488715 Cme12g01838 Cme-Chr12:24732892 1.63E-107 dispersed
Cme12g01838 Cme-Chr12:24732892 Cme01g01218 Cme-Chr1:15398386 1.12E-65 dispersed
Cme12g01838 Cme-Chr12:24732892 Cme04g02435 Cme-Chr4:30989682 3.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65351 PF07714 PK_Tyr_Ser-Thr 5.40E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01838 - - csv:101209024 1901.33