Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01839 ATGGGTGATAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCCGTTGACACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATACGCATCCTCAGAGAAATTAAGCTTCTCCGGATGCTTCATCATCCAAATATTGTAGAGATAAAGCATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGACAAATAATGATCTTTCTCCCCGGCAGCATAAATTTTTCCTGTACCAGCTTCTTAGTGGCCTAAAATATATTCATACTGCAAATGTCCTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATGCGGACTGCAGACTCAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCACCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCTGAACTATGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTGACAGGGAGACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATCACCGATCTGTTTGGCTCTCCGGAACCTGAGGCCATAGCAAAGATTCGTAATGAGAAGGCGAGAAGGTATCTCGGAAACATGCGTAAAAAACAACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCAATGGCACTTTGTTTACTGGAACGTCTCCTAGCATTTGATCCCAAATGTCGTCTAACAGCTGCAGAGGCCCTTGCTGATCCTTACTTCAACGGCATGGCGAAACCAGAACTTGAACCTTCTATTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGGAAGTTATCCAAAGATGATGTTAGAGAGTTGATTTATGCAGAGATTTTAGAGTATCATCCCCAGTTGCGTCAGGGTTGTCTACGTGGTGGAGATCATCCAACTACCTTCATGTATCCAAGTGGGGTCGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCACGGTAAAGGTGAAAGAAGAAGTCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGTCCCACCGAGCAGAACAACACTGAGAATAACATCGATTCCGAAAGAGGGAAAGATAATTGTGCTCATCTCTTGAAAAGTGCAAGTATCAGTGCATCGAGATGTGTTGGAGTAATACCAAAGGAGAAGTCTGAGGTGGAAGAAACTGAAGTGAAAAATGAAGCAGTGGATGGCTTGTCTAAAAAGATTGCTGTCCTTCAAACTTAA 1440 41.11 MGDKQSEFFTEYGEASRYQIQEVIGKGSYGIVGSAVDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKTNNDLSPRQHKFFLYQLLSGLKYIHTANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDLITDLFGSPEPEAIAKIRNEKARRYLGNMRKKQPVPFSRKFPNVDPMALCLLERLLAFDPKCRLTAAEALADPYFNGMAKPELEPSIQPISKLEFEFERRKLSKDDVRELIYAEILEYHPQLRQGCLRGGDHPTTFMYPSGVDRFKLQFAHLEEHHGKGERRSPLQRQNISLPRERVSPTEQNNTENNIDSERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSKKIAVLQT 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24749678 24754160 + MELO3C002124.2.1 Cme12g01839 345056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01839 479 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 439 - -
Cme12g01839 479 MobiDBLite consensus disorder prediction 398 421 - -
Cme12g01839 479 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Cme12g01839 479 MobiDBLite consensus disorder prediction 388 429 - -
Cme12g01839 479 SUPERFAMILY Protein kinase-like (PK-like) 14 316 IPR011009 -
Cme12g01839 479 Gene3D Transferase(Phosphotransferase) domain 1 104 332 - -
Cme12g01839 479 Pfam Protein kinase domain 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01839 479 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Cme12g01839 479 ProSitePatterns MAP kinase signature. 53 156 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme12g01839 479 ProSiteProfiles Protein kinase domain profile. 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01839 479 SMART serkin_6 18 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01839 479 CDD STKc_TDY_MAPK 17 354 - -
Cme12g01839 479 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 439 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01691 Cme12g01839 CCT
Cme02g01691 Cme12g01839 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00941 Cme-Chr10:7097861 Cme12g01839 Cme-Chr12:24749678 1.05E-11 dispersed
Cme10g00942 Cme-Chr10:7097861 Cme12g01839 Cme-Chr12:24749678 1.81E-11 dispersed
Cme11g01564 Cme-Chr11:23160600 Cme12g01839 Cme-Chr12:24749678 0 dispersed
Cme11g01943 Cme-Chr11:27494941 Cme12g01839 Cme-Chr12:24749678 0 dispersed
Cme12g01839 Cme-Chr12:24749678 Cme03g01425 Cme-Chr3:23635980 1.52E-111 dispersed
Cme01g00523 Cme-Chr1:3899329 Cme12g01839 Cme-Chr12:24749678 1.84E-98 transposed
Cme02g00024 Cme-Chr2:256749 Cme12g01839 Cme-Chr12:24749678 1.75E-45 transposed
Cme02g00190 Cme-Chr2:1497562 Cme12g01839 Cme-Chr12:24749678 1.69E-09 transposed
Cme04g01044 Cme-Chr4:14330380 Cme12g01839 Cme-Chr12:24749678 1.14E-20 transposed
Cme08g02514 Cme-Chr8:32034011 Cme12g01839 Cme-Chr12:24749678 4.03E-54 transposed
Cme10g00940 Cme-Chr10:7096653 Cme12g01839 Cme-Chr12:24749678 3.13E-49 transposed
Cme11g01144 Cme-Chr11:17338054 Cme12g01839 Cme-Chr12:24749678 2.67E-56 transposed
Cme12g01839 Cme-Chr12:24749678 Cme02g01691 Cme-Chr2:24013113 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65352 PF00069 Pkinase 1.30E-67 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01839 - - bhj:120082540 910.212