Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01841 ATGAAGAGCCTCAGCCAGCAGTGTCGGATGATGTTGCTTGTCATATTCATAAGCATCCTCCTTGCTGGTTTTGTGCCATTCAGCTTTGCTTCTCCTGTCATTCGACGATTTCAGCATGGGGTCAAGCAATTAAGAACAGGATGGGCAGATGGTCCGGCTTACATAACACAGTGTCCTATAAGATCAGGAGAATCATACACATACAAATTCTCAGTGATTGACCAAAGAGGGACACTGTGGTGGCACGCACATTACTCATGGCAACGTGCTTCTGTGCATGGTGCCTTCATCATTTACCCTCGCATGCCTTACCCATTCTCCACTTTTCCAATTGAAGCTGGGATTCCTCTTATTTTTGGTGAATGGTGGAATGGGGATGTGGAAGAAGTTGAAAATGAGATGCTAAAATCTGGAGGTGGACCTAACAATTCTGATGCCTATACCATTAATGGCTTGCCGGGACCTCTTTATCCTTGCTCTAGCAGAGATACATTCATTTCAACAGTAGAAAGGGGGAAAACTTACCTGCTGAGAGTAATTAATGGAGCACTCAACGATGAACTTTTCTTTGCCATAGCCAACCATACATTGACAGTGGTGGAGATTGATGCTGCATACACAAAACCCTTCAATACCACAGCCATTATGATAGCTCCCGGCCAAACCACCACTCTTCTACTCAATACAGATCAAATTCAAATTCCAGACCACTCCTCTGGAATCCTCTTCCCAATGGCAATCACACCCTATGTAACTTCAAGTTTCCCCTTCAACAACTCCACCTCCATTGGCTTCTTAAGATACAAGAGCAGGAAAATGAATAAACTTAAACGAAAAACAAAATTCCCATCTAATCAAATACCTGAAAACCTCCCCGATATGAAGGATACAGCCTTTGCCACTGCATTTTCCAACAAACTCCGTAGCCTTAATTCTCCCCTGTACCCTTGTAATGTTCCTAAAACAGTTCACAAAAGAGTGTTCGTTACCATAAGCCTCAATCTCCAGAACTGCCCATCTAGGAAATCCTGCAAGGGTTTGAACGGAAAGAGATTTTTCGCTTCTATGAACAATCAATCCTTCATTCGACCGGATTCGTCCATATTGGAATCCCATTATAGAAAAATCGCTACCAATTCGTACTCCACTGATTTTCCAGAAAAACCCATCACGGTTTTTGATTATACTGGCGTAAACCCATTAACCAAAAACATGAACACAGAATTTGGGACAAAGCTTTTGGCGGTTCCATATGGAACAAATCTGGAAATCGTGTTTCAGGGCACGAATTTTCTTAGTGTGGAGAATCATCCGATCCATGTTCATGGGCACAATTTCTTCGTTGTAGGCAGGGGATTTGGGAATTTCAACGCGGGTAGGGATCCGGCGAAGTACAATCTGGTTGATCCACCGGAAAGAAACACGGTGGCGGTGCCGAGGGGAGGGTGGGCAGCGATCAGAATTAAGGCGGATAATCCTGGAGTTTGGTTTATACATTGTCATCTTGAAGAACATACTTCATGGGGACTTGCAATGGGTCTCATAGTACGAAATGGAGCAGGGGATTCTAAATCTCTGCTTCCTCCTCCGGATGATCTTCCTCTCTGCTGA 1611 43.95 MKSLSQQCRMMLLVIFISILLAGFVPFSFASPVIRRFQHGVKQLRTGWADGPAYITQCPIRSGESYTYKFSVIDQRGTLWWHAHYSWQRASVHGAFIIYPRMPYPFSTFPIEAGIPLIFGEWWNGDVEEVENEMLKSGGGPNNSDAYTINGLPGPLYPCSSRDTFISTVERGKTYLLRVINGALNDELFFAIANHTLTVVEIDAAYTKPFNTTAIMIAPGQTTTLLLNTDQIQIPDHSSGILFPMAITPYVTSSFPFNNSTSIGFLRYKSRKMNKLKRKTKFPSNQIPENLPDMKDTAFATAFSNKLRSLNSPLYPCNVPKTVHKRVFVTISLNLQNCPSRKSCKGLNGKRFFASMNNQSFIRPDSSILESHYRKIATNSYSTDFPEKPITVFDYTGVNPLTKNMNTEFGTKLLAVPYGTNLEIVFQGTNFLSVENHPIHVHGHNFFVVGRGFGNFNAGRDPAKYNLVDPPERNTVAVPRGGWAAIRIKADNPGVWFIHCHLEEHTSWGLAMGLIVRNGAGDSKSLLPPPDDLPLC 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24756875 24759486 + MELO3C002123.2.1 Cme12g01841 345058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01841 536 CDD CuRO_3_LCC_plant 381 519 IPR034289 GO:0005507
Cme12g01841 536 Gene3D - 338 536 IPR008972 -
Cme12g01841 536 SUPERFAMILY Cupredoxins 39 128 IPR008972 -
Cme12g01841 536 TIGRFAM laccase: laccase 38 536 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cme12g01841 536 Pfam Multicopper oxidase 39 101 IPR011707 GO:0005507
Cme12g01841 536 CDD CuRO_2_LCC_plant 115 268 IPR034285 -
Cme12g01841 536 ProSitePatterns Multicopper oxidases signature 1. 494 514 IPR033138 -
Cme12g01841 536 ProSitePatterns Multicopper oxidases signature 2. 499 510 IPR002355 GO:0005507
Cme12g01841 536 Gene3D - 37 100 IPR008972 -
Cme12g01841 536 PANTHER MULTI-COPPER OXIDASE 37 536 IPR045087 -
Cme12g01841 536 Pfam Multicopper oxidase 385 518 IPR011706 GO:0005507|GO:0016491
Cme12g01841 536 Gene3D - 112 312 IPR008972 -
Cme12g01841 536 SUPERFAMILY Cupredoxins 313 536 IPR008972 -
Cme12g01841 536 PANTHER LACCASE-1 37 536 - -
Cme12g01841 536 SUPERFAMILY Cupredoxins 115 310 IPR008972 -
Cme12g01841 536 Pfam Multicopper oxidase 116 231 IPR001117 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01841 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101208781 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01841 Cme-Chr12:24756875 Cme07g01656 Cme-Chr7:22243431 0 dispersed
Cme12g01841 Cme-Chr12:24756875 Cme04g02697 Cme-Chr4:32436632 3.36E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00705 Chy12g01406 Cme12g01841 . . . . . Bpe15g00517 . . . . . . Cma18g00063 . Car18g00055 Cpe09g01121 . . . . . . . . Cla04g01057 Cam04g1099 Cec01g1614 Cco01g1659 Clacu04g1124 Cmu04g1108 Cre01g1408 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484