Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01843 ATGCATAGAATCAATCTGCTTCGTCACTATAAGATAGTCCCAGTTGTTGTTTTCGACGGCGGGAATCTTCCGTGCAAGGCAGTCACTCAGCAAGAGAGGCACAGAAAAAAAGAGAAAAACAGGGAATTAGCAATGGAGAAGCTGAAAGAAGGGAATATTAATGCTGCCTCTGAGCTTTTCCAGCGAGCAGTGAACATTACTCCATCCATAGCAAATCAACTCATAAAGGCAAAACACAACATCGAATTCGTCGTAGCCCCTTATGAGGCTGATGCACAGTTGGCATATCTTTCCAGCCTCGGAACACAAAACGGTGGAATTGCGGCTGTGATCACAGAGGATAGTGACATGATTGCATATGGTTGTAAAGCTACAATCTTTAAGATGGACCGATATGGCAATGGTGAAGAGATGATGCTGGATAAGATTTTTAACTCTGCTAGCTGTACACCTTCCTTCAGAGATTTTGACAAGGAATTGCTGACAGGCATGTGTGTCTTAGCTGGCTGTGACTTTCTTCCTTCTGTTCCTGGAATCGGCATCGCAAGGGCTTACGCTCTGGTCTCCAAGCATCGGAATCTGGAACATGCTCTTTCTGCTTTGAAGCTTCAGAAAAAGGAGAAAATGCCTGAAGATTACTTCAAACTTTTCAGACAAGCTATGGCAGTCTTTCAGCATGCACAAATTTATGATGCTGAAACGAGGAAGCTCATACCCATGAAGCCGCTTCCCTTAGAGCTTCTGCAGGCCCTAGATGAAGAAATTGATTTTTTGGGACCAGATATGCCTCCTTCAATAGCTGTTTCAATAGCCGAAGGAAGGTTAAATCCCGTAACTATGGAGGCCTTTAGCTATTTCTCGAGTGAAGAATGTAGCCAAGACCTTATAATAAAGAATAACGAAACACTTCCAAGGACGGAGAAAGCTGAGGTATCTGGGAAGGAGAGCTGTTTTATGGTCGTTGGTAAGGACAGAGAAAGACATATCCCAGATAAGAGAATTAAACCTGTAGCAGGCTATAAGAATTCTAAAGAAGAATTTGCACTTGAGAAGCTAATTACACCGTCGAGTGTTCCAAGAACAAATGAAGACAAACCTGTTCTTGGCTACAAATCAATAAAGACTCCGGATAACAATCCATTCAAGAGAAGGAAAGTTGATGAATTGCCCTTGGATCTAGCGCAAAGGGTTGATGAAGAAGTTTCAGTCGTAAGTGAGGATGAATGTGCCTTATTATCGTGCGCCACTTCAGATAACTTAATATCAAAATCTTCTAATAAAAGAAAACTAAATGAAGCTCTCACTGGCCAAAAGGACAACGCTACTGAGCATATATCAGGGGTAACCCAAGAAGAGGATTCGGTGCTGTTAGAACTGCCACCAGAATCCCAAAAAAGCATAACCGCAAAGGCAAGCAGTGTTATAGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGGTAAAAAGTAGTTCAGGGATTCCAAAGAATAGTATATTGAACTTCTTCTCTAAAGTATTATCATGTAAATTTCTGTCTTGA 1539 41.72 MHRINLLRHYKIVPVVVFDGGNLPCKAVTQQERHRKKEKNRELAMEKLKEGNINAASELFQRAVNITPSIANQLIKAKHNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDMIAYGCKATIFKMDRYGNGEEMMLDKIFNSASCTPSFRDFDKELLTGMCVLAGCDFLPSVPGIGIARAYALVSKHRNLEHALSALKLQKKEKMPEDYFKLFRQAMAVFQHAQIYDAETRKLIPMKPLPLELLQALDEEIDFLGPDMPPSIAVSIAEGRLNPVTMEAFSYFSSEECSQDLIIKNNETLPRTEKAEVSGKESCFMVVGKDRERHIPDKRIKPVAGYKNSKEEFALEKLITPSSVPRTNEDKPVLGYKSIKTPDNNPFKRRKVDELPLDLAQRVDEEVSVVSEDECALLSCATSDNLISKSSNKRKLNEALTGQKDNATEHISGVTQEEDSVLLELPPESQKSITAKASSVIGRKRVVGKENKVKSSSGIPKNSILNFFSKVLSCKFLS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24765518 24770236 - MELO3C002121.2.1 Cme12g01843 345060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01843 512 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 157 288 IPR036279 -
Cme12g01843 512 SMART xpgineu 77 149 IPR006086 GO:0004518
Cme12g01843 512 ProSitePatterns XPG protein signature 2. 80 94 IPR019974 GO:0016788
Cme12g01843 512 Pfam XPG N-terminal domain 2 39 IPR006085 GO:0004518
Cme12g01843 512 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 161 176 IPR006084 -
Cme12g01843 512 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 93 IPR006084 -
Cme12g01843 512 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 14 33 IPR006084 -
Cme12g01843 512 CDD PIN_EXO1 1 145 IPR044752 GO:0046872
Cme12g01843 512 SMART HhH_4 158 191 IPR008918 GO:0003677|GO:0003824
Cme12g01843 512 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 500 IPR006084 -
Cme12g01843 512 Gene3D - 1 150 - -
Cme12g01843 512 CDD H3TH_FEN1-like 159 231 - -
Cme12g01843 512 SUPERFAMILY PIN domain-like 1 171 IPR029060 -
Cme12g01843 512 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 500 - -
Cme12g01843 512 Pfam XPG I-region 80 171 IPR006086 GO:0004518
Cme12g01843 512 Gene3D - 154 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01843 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - csv:101208542 908.672
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01245 Cme-Chr12:20595582 Cme12g01843 Cme-Chr12:24765518 3.62E-64 dispersed
Cme12g01843 Cme-Chr12:24765518 Cme04g01910 Cme-Chr4:26790392 3.86E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30