Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01846 ATGGATATCGAGGAGGAAATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTTCTAATCAAGATGCAAAGATGGAGGATGTTGGGGAATCCAAAAATCTGGAAGAAGATGTGAAGACAGAAGAAATTGTGAAGTCCGATGAGATGGAAGAAGAGGATCATCCCCAACAAACCCAAGCTAACCACCTTGAAGAACAAGTGAAGGAGAACACATCTGCTAAGGAGAAGGAAGTTTCGTTGGCTGATGAAAATGAAGTTGAAGAGGATTTGGAATTGGATCGCAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGAAAGTCTACAATTGGAGGCCAGATACTTTTCCTCAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGATAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGTCGAGCGCATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGGGCATCTCAAGCTGATATAGGGGTTCTGGTAATTTCTGCCAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACGCGTGAGCATGTTTTGCTGGCCAAAACTTTGGGTGTTGCTAAGCTTCTTGTTGTAGTGAATAAGATGGACGATCCCACTGTTAAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCCAAGATGGCACCCTTCTTGAGGTCTTCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGCGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGCCCATGGTGGGATGGTCCGTGCTTCTTTGAAATCCTTGATATGATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATTGACAAGTTCAAGGACATGGGAACAACTGTGATGGGTAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCTTATTGTTAATGCCAAATAAGATACAGGTGAAAGTTACTGCTGTGATGTGTGATGAAAATAAAGTTCGGAGTGCTGGACCTGGGGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGATATAATGTCTGGGTTTGTACTATCAAGCATTGCGAAGCCAATACCCTCTGTTTCTGAGTTTATTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCCGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATAGAGCTGCTACAGCAGATTGATCCGAAGACTAGGAAACCTATGAAAAAGAAAGTTCTCTTTGTCAAGAATGGTGCAGTTATTTTGTGCCGTGTCCAGGTCAATAACTTGATCTGCATCGAGAAGTTTTCTGATGTTCCTCAGCTTGGAAGATTTACTCTTCGTACCGAAGGGAAAACAGTTGCTGTAGGAAAAGTCACCGATATTTCTTCTGCTAGCAATTAA 1587 40.96 MDIEEEIRALELDPPDVNGVSNQDAKMEDVGESKNLEEDVKTEEIVKSDEMEEEDHPQQTQANHLEEQVKENTSAKEKEVSLADENEVEEDLELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDPTVKWSKERYDEIESKMAPFLRSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWDGPCFFEILDMIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLLMPNKIQVKVTAVMCDENKVRSAGPGENLRVRISGIEEEDIMSGFVLSSIAKPIPSVSEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDISSASN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24787993 24798536 + MELO3C002118.2.1 Cme12g01846 345063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01846 528 Gene3D Translation factors 416 524 - -
Cme12g01846 528 MobiDBLite consensus disorder prediction 69 83 - -
Cme12g01846 528 Gene3D - 75 320 IPR027417 -
Cme12g01846 528 Pfam Elongation factor Tu domain 2 341 407 IPR004161 GO:0005525
Cme12g01846 528 SUPERFAMILY Translation proteins 321 413 IPR009000 -
Cme12g01846 528 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 418 523 IPR009001 -
Cme12g01846 528 MobiDBLite consensus disorder prediction 1 87 - -
Cme12g01846 528 MobiDBLite consensus disorder prediction 27 61 - -
Cme12g01846 528 Gene3D Translation factors 326 410 - -
Cme12g01846 528 PANTHER TRANSLATION FACTOR 75 519 - -
Cme12g01846 528 PANTHER BNAA06G12300D PROTEIN 75 519 - -
Cme12g01846 528 CDD EF1_alpha 101 322 - -
Cme12g01846 528 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 153 168 IPR031157 -
Cme12g01846 528 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 97 326 IPR000795 GO:0003924|GO:0005525
Cme12g01846 528 CDD eRF3_II 328 409 - -
Cme12g01846 528 Pfam Elongation factor Tu C-terminal domain 414 523 IPR004160 -
Cme12g01846 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 332 IPR027417 -
Cme12g01846 528 Coils Coil 124 144 - -
Cme12g01846 528 Pfam Elongation factor Tu GTP binding domain 97 313 IPR000795 GO:0003924|GO:0005525
Cme12g01846 528 CDD eRF3_C_III 415 523 - -
Cme12g01846 528 PRINTS GTP-binding elongation factor signature 101 114 IPR000795 GO:0003924|GO:0005525
Cme12g01846 528 PRINTS GTP-binding elongation factor signature 180 190 IPR000795 GO:0003924|GO:0005525
Cme12g01846 528 PRINTS GTP-binding elongation factor signature 196 207 IPR000795 GO:0003924|GO:0005525
Cme12g01846 528 PRINTS GTP-binding elongation factor signature 240 249 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01846 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 967.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01780 Cme-Chr11:25980607 Cme12g01846 Cme-Chr12:24787993 4.11E-90 dispersed
Cme12g01846 Cme-Chr12:24787993 Cme04g02151 Cme-Chr4:28802194 7.31E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44