Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01850 ATGGAAGTGAAAGATCTTGAATTTTTTATGGTTCCACTTGGCTTTGCGGTGCTGGTGAGCTACCATCTTTGGCTGATAATCACCATTTACAGAAGGCCTAAAAGAACAGTAATCGGAGTCAACGCTGAGTCTCGCAGACAATGGGTCTCCACCATGATTTCAGTTGTTTCGCTTTCAAGGGGATGTGGCCTTGAGGTGACTCAGTTTACTACAACAAATTCTTCTCTTGACCCTGCAAAGAATGGTGTTCTTGCTGTTCAAACCATACGAAACAACATCATGGCTTCTACGCTTATGGCCACGACGACGATCACCATCGGCTCATTGATCAGTGTTTTTGTGAGCAGCACATCAAGTACTGGAAAGTACCGTTACATTGTATTGTGTTTTCTTGTTGCCTTCCTTTGCAATGTGCAGTCTATTAGATACTATGCTCATGCCAGCTTCTTAGTCACTTTGCCTGATGGTGAAGGAAGAAAAGAGTATCTTGCTGCTATATTGAATCGAGGAAGTTTATTTTGGTCGCTCGGATTACGAGCTTTCTATTTCACAATTCCTCTCTTCCTCTGGATCTTTGGGCCTCTATCAATGTTTGCGAGTTGTTACCTGATAACATTTGTTCTTTACTTCTTGGACTATACTGGATCTTCCAAGTATGATCCTTATGAATATGTACAAAAGGAAGAAGCGAACAACAATGACATTGAATCAGTTGGTCAATCAAGGGGAGTCAATCTTGTCGAAAACTCCTCCCTTCAATCTCCTCTACTTGCAAGTCACAGTATGACTTCCAACTTAAACGGCTCTGCAAATCAAAACTGA 822 41.73 MEVKDLEFFMVPLGFAVLVSYHLWLIITIYRRPKRTVIGVNAESRRQWVSTMISVVSLSRGCGLEVTQFTTTNSSLDPAKNGVLAVQTIRNNIMASTLMATTTITIGSLISVFVSSTSSTGKYRYIVLCFLVAFLCNVQSIRYYAHASFLVTLPDGEGRKEYLAAILNRGSLFWSLGLRAFYFTIPLFLWIFGPLSMFASCYLITFVLYFLDYTGSSKYDPYEYVQKEEANNNDIESVGQSRGVNLVENSSLQSPLLASHSMTSNLNGSANQN 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24810848 24813198 + MELO3C002114.2.1 Cme12g01850 345067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01850 273 PANTHER OS02G0292800 PROTEIN 1 245 - -
Cme12g01850 273 Pfam Protein of unknown function, DUF599 77 214 IPR006747 -
Cme12g01850 273 Pfam Protein of unknown function, DUF599 10 53 IPR006747 -
Cme12g01850 273 PANTHER OS01G0683700 PROTEIN 1 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01850 - - - csv:101217102 444.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01711 Cme12g01850 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02224 Cme-Chr4:29414470 Cme12g01850 Cme-Chr12:24810848 8.96E-67 dispersed
Cme12g01764 Cme-Chr12:24280478 Cme12g01850 Cme-Chr12:24810848 1.54E-20 dispersed
Cme12g01850 Cme-Chr12:24810848 Cme02g01711 Cme-Chr2:24157069 1.44E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g271 . . . Bda15g00501 Bpe12g00706 . . . Cmo13g01044 . Cma10g00314 . Car10g00297 . . . . Bhi02g00107 . . . Hepe09g0366 . . . . . . . . . Cone2ag0743 . . . Lsi02g00214 Csa01g00697 . Cme12g01850 Blo13g00182 . . . . . . Bma08g00044 Sed01g1749 Cmo10g00337 . Cma13g01006 Cma18g00055 Car13g00841 Car18g00049 . . Bhi08g01265 Tan05g2224 Cmetu12g0059 Lac10g0268 . . . . . . . . . . Lsi06g01308 Csa01g00407 Chy02g02337 Cme02g01711
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001251 3 5 2 2 2 2 5 1 2 1 1 2 3 3 3 3 1 3 2 1 3 3 3 3 2 1 3 4 4 3 76