Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01859 ATGAAAATTTCCCTCCCTCTCTTCCTCTTCTTCACAATCATTTTGTTTGATCTTCATCTCTGTTACGCTGATGATTCCCACGATGAATTCAAAGCTTGCGGTGTGTATTACAACTGCGGTGATTTGGTTAACATCTCCTATCCATTTTGGGGAAATGAGCGCCAATCCTTTTGCGGTCGCCGAGAATTCGGCCTCATTTGCAAAGACAACGAAAAGACTACGATTCAAATCCGTTATCGGCAATATATTGTTGTGAACATCAGTCAATCGGATCATAGAATGACGATCGCAAGATCAGAGCTGTTCGATGATTACTGCCCTAACAATGAAATTGGAGTGGCGACGTTGGATTTTAGTCTGTTCAAGTATTCTTCGAACGATCTGAATCTGTCCGTGTGGTACGATTGTCCGGTGCTGCCGGGAATCCCGCAGAATTTCGAATTTAAGTGTGGATCGGAAGGGGAAAGAAGCGGGAAAGCAAATTATGCTTTGGAGGAGAATGAAGCGATGAGTTGGAGTGCATATACCGGAGAATGTAGAATTAAAATCGAAGTGACAATTGCGTTGGAGGTATTTAGGGAAGGGAAAATGAACAGAACGATGATGATGGAAAGGGGAATGAAAGAAGGGTTTGAAGTTGAATATGGGGATTTGTACACCATAGCTTGCGAGGGATGCAAGGAATACGGCGGGGCGTGTGGCAGAAACGCGACAAAAGAATTTCTATGCATTTGTAGAAATGGAGATGTACATCCTTATGTTTGCAAACCTCCTCCGGGTATGTTTAATTTCTTGTCTATTGCATCATACTCTTCCGGCCCAGACAATGGTAGTATTTTTACGGCTGCATTTTCGGGAACTAGCGGTCTGATAATCTTTATAATCATCATCGGCATCTACTACACGAGAAAAAACAAATCAAACAAAGATAAAATTGAGGAGAGTATAAGAAGATATTCCACACTAATGCCCAAGCGATATAGTTACTCAAAGTTGAAGAAAATCACAAACTCCTTCAAGAACAAATTAGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCTGACGGACGTGACGTGGCTGTGAAACTTTTGAATGAGTCGAGAGAAAATGGCCAAGATTTCATGAACGAAGTTGTTAGCATCACCAGAACTTCGCATGTAAATATAGCCTCACTCTTAGGTTTTTGTTACGAGAGGAAGAAGAGAGCTTTGATTTATGAATATATGCCTAGAGGGTCATTAGACCAATATATATCCCACAAAGGGCCACATAGAAACAACGTTGAGTTGGATTGGAACACACTTTATAGCATCGTTATCGGTGTGGCGCGGGGATTAGAATACTTGCACCGTGGTTGCATAACAAGGATTTTACATTTTGACATCAAACCACACAACATACTTTTGGATAGTGATTTTTGTCCAAAGATCTCAGACTTTGGGCTTGCCAAGCAATGTAGAGCTAAAGAAAGTCATGTAACAATGACGGGTGTGAAAGGTACGGTAGGATTTATTGCACCTGAAGTAATATTCAGGAACTTTGGTAAGGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCAAATGATGGAGTGGGGCAAGGCAGTGGAGAGTACTTTCCTGATTGGATTTATAACAATCTTACACAAAGTGAAATAGATGAAGGTTTTTTGCGGGGAAACACAGAAGAAGAAAAGGAGATGACAAGAAAAATGATAATCGTGGGACTACATTGTATTCAAACATTGCCTGACGACAGGCCGTCGATGACCGATGTTGTTGCAATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCTTCAAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATCAAACGAAATTCCTAATTATAGTTTGATATTTTAG 1962 41.08 MKISLPLFLFFTIILFDLHLCYADDSHDEFKACGVYYNCGDLVNISYPFWGNERQSFCGRREFGLICKDNEKTTIQIRYRQYIVVNISQSDHRMTIARSELFDDYCPNNEIGVATLDFSLFKYSSNDLNLSVWYDCPVLPGIPQNFEFKCGSEGERSGKANYALEENEAMSWSAYTGECRIKIEVTIALEVFREGKMNRTMMMERGMKEGFEVEYGDLYTIACEGCKEYGGACGRNATKEFLCICRNGDVHPYVCKPPPGMFNFLSIASYSSGPDNGSIFTAAFSGTSGLIIFIIIIGIYYTRKNKSNKDKIEESIRRYSTLMPKRYSYSKLKKITNSFKNKLGQGGFSTVYKGKLPDGRDVAVKLLNESRENGQDFMNEVVSITRTSHVNIASLLGFCYERKKRALIYEYMPRGSLDQYISHKGPHRNNVELDWNTLYSIVIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCRAKESHVTMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDGVGQGSGEYFPDWIYNNLTQSEIDEGFLRGNTEEEKEMTRKMIIVGLHCIQTLPDDRPSMTDVVAMLEGSVDGLQIPSKPNLFGPPTFEHPQPSSSSSNEIPNYSLIF 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24862478 24865135 + MELO3C002103.2.1 Cme12g01859 345076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01859 653 PANTHER - 16 642 - -
Cme12g01859 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 642 IPR045874 GO:0004672
Cme12g01859 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cme12g01859 653 SUPERFAMILY Protein kinase-like (PK-like) 313 613 IPR011009 -
Cme12g01859 653 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Cme12g01859 653 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01859 653 Pfam Protein tyrosine and serine/threonine kinase 339 612 IPR001245 GO:0004672|GO:0006468
Cme12g01859 653 MobiDBLite consensus disorder prediction 623 653 - -
Cme12g01859 653 Pfam Wall-associated receptor kinase galacturonan-binding 38 98 IPR025287 GO:0030247
Cme12g01859 653 MobiDBLite consensus disorder prediction 633 653 - -
Cme12g01859 653 CDD STKc_IRAK 343 614 - -
Cme12g01859 653 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01859 653 Gene3D Phosphorylase Kinase; domain 1 308 411 - -
Cme12g01859 653 Pfam Wall-associated receptor kinase C-terminal 150 247 IPR032872 -
Cme12g01859 653 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02200 Cme-Chr7:26247744 Cme12g01859 Cme-Chr12:24862478 8.66E-24 dispersed
Cme10g00236 Cme-Chr10:1554608 Cme12g01859 Cme-Chr12:24862478 5.04E-176 dispersed
Cme12g01859 Cme-Chr12:24862478 Cme12g01861 Cme-Chr12:24866752 0 dispersed
Cme12g01859 Cme-Chr12:24862478 Cme12g01860 Cme-Chr12:24863936 7.09E-12 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65354 PF07714 PK_Tyr_Ser-Thr 4.70E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01859 - - csv:101207814 1068.14