Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01861 ATGACGATGCCAGATCAAACCTTTTCGAAACTTACTGCCCAGAAAATCAATTTCAGACGGCGAGGTTGGATAAAAGTTTGGTGTTTCTTCTTCACAATGGTTTGGTTTGATGTTCAGCTCTGTTTGGGCGATGATAACTACGAGCAATTTAAATATTGCCGGGTGAACTACAACTGTGGAGATTTGGTAGACATATCGTATCCGTTTTGGGGGAATGAGCGGCCAGAATTTTGCGGTCGGCGAGAATTTGGACTCAATTGCAAAGACAACAAAACCATGATACGAATCAACAATCGCCAATATATCGTTGTGGACATCAGTCAATCGAATAATAGAATGACGATAGCAAGATCAGAGCTGTTCGATGATTACTGCCCTAACAGCCAAATAAAAGTAGCAACGTTGTTGGATTTCAGTCTGTTCAGTTATACTTCGAATAATCAGAATCTGTCTTTGTGGTACAATTGTCCGCCGCTAGTGAATGTTCCGTCGAATTTCACATTTGAGTGCGGAGGGGAAGAGGAAGAAAGTAATAGGAGAGTGAATTATGCTTTGGACAAGAATGAGGCGAAGAATTGGAGTTCATATATGGGAGATTGTAGTATGAACATCGAAGTGACGATTACGGGTGATGTATTGAGAGGAGGAGTAAAGAACAGAACGAGGGTGGTGGAAAGGGGATTGAAAGAAGGATTTGAAGTTGAATATGGGGATTCTTACACCATAGCTTGCGATGGATGTACAGAATACGGCGGCCAGTGCGGTTCCGTCGTTCGCGAACAATTTGCCTGCTTTTGTGGAGGTGGTATATATCCTTACGTTTGCGGACCTCCTTCTCCTCCAGCTGCAGCTTCGGGAGCCATCATTCTGATAATCTCTATAATCATCTGCATCTACTGCACGATAAAATGCATATCAAACAAAGATAAAATAATTGAGGAAAGTATAAGGAGATATTCTACACTAACTCCCAAGCGATATAGTTACTCAAAGCTGAAGAAAATCACGAACTCCTTCAAGAACAAATTAGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCTGACGGACGTGATGTGGCTGTGAAAGTTTTGAACAAGTCCAGCGAAAATGGCCAAGATTTTATCAATGAAGTGGTTAACATCACTAGAACTTCGCACGTAAATATAGTCTCACTCATAGGTTTCTGTTACGAGAGGAAAAAAAGAGCTTTAATTTATGAATATATGTCTAGAGGGTCATTAGACAAATATATATCTCACAAAGGGCCACAGACAAACAACGACAAGTTGGATTGGAACACACTTTATAGGATTGTTATTGGTGTGGCTCGAGGCTTAGAGTACTTGCATCGTGGTTGTAACACAAGGATTTTGCATTTTGACATTAAACCACATAACATACTTTTGGATAGCGATTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGCCGGAGAAAGTCATGTAACGATGACAGGCGTGAAAGGGACAGTAGGATTTATTGCGCCTGAACTAATATTCAGGAACATTGGTAATGTATCTCACAAGTCTGATGTATATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCAAATGATGGAGTGGGGCAAAACGGTGAAGAGTTCTTTCCTGATTGGATATATAATACTCTCACACAAAGTGAAATAGATGAAGACTGTTTGTGGGGAAACACAGAAGAAGAAAAAAAGATGACAAGAAAAATGATAATCGTGGGACTACATTGTATTCAAACATTGCCCAACGACAGGCCGTCGTTGACCGATGTTGTTGCAATGTTGGAAGGCAGTGTTAATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCTTTGAGCATCCCCAACCTTCTTCCTCTTCATTTTCTAGCATAGAAGCATCACAACAACAATCATATTTACCCTCTTGA 1974 40.93 MTMPDQTFSKLTAQKINFRRRGWIKVWCFFFTMVWFDVQLCLGDDNYEQFKYCRVNYNCGDLVDISYPFWGNERPEFCGRREFGLNCKDNKTMIRINNRQYIVVDISQSNNRMTIARSELFDDYCPNSQIKVATLLDFSLFSYTSNNQNLSLWYNCPPLVNVPSNFTFECGGEEEESNRRVNYALDKNEAKNWSSYMGDCSMNIEVTITGDVLRGGVKNRTRVVERGLKEGFEVEYGDSYTIACDGCTEYGGQCGSVVREQFACFCGGGIYPYVCGPPSPPAAASGAIILIISIIICIYCTIKCISNKDKIIEESIRRYSTLTPKRYSYSKLKKITNSFKNKLGQGGFSTVYKGKLPDGRDVAVKVLNKSSENGQDFINEVVNITRTSHVNIVSLIGFCYERKKRALIYEYMSRGSLDKYISHKGPQTNNDKLDWNTLYRIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDSDFCPKISDFGLAKQCKAGESHVTMTGVKGTVGFIAPELIFRNIGNVSHKSDVYSYGMLVLEMVGARKNPNDGVGQNGEEFFPDWIYNTLTQSEIDEDCLWGNTEEEKKMTRKMIIVGLHCIQTLPNDRPSLTDVVAMLEGSVNGLQIPPKPNLFGPPTFEHPQPSSSSFSSIEASQQQSYLPS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24866752 24871049 + MELO3C002102.2.1 Cme12g01861 345078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01861 657 Gene3D Transferase(Phosphotransferase) domain 1 412 620 - -
Cme12g01861 657 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01861 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cme12g01861 657 PANTHER - 42 649 - -
Cme12g01861 657 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Cme12g01861 657 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01861 657 Pfam Wall-associated receptor kinase C-terminal 170 268 IPR032872 -
Cme12g01861 657 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01861 657 MobiDBLite consensus disorder prediction 633 657 - -
Cme12g01861 657 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cme12g01861 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 42 649 IPR045874 GO:0004672
Cme12g01861 657 SUPERFAMILY Protein kinase-like (PK-like) 315 613 IPR011009 -
Cme12g01861 657 MobiDBLite consensus disorder prediction 623 657 - -
Cme12g01861 657 Pfam Wall-associated receptor kinase galacturonan-binding 53 117 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01859 Cme-Chr12:24862478 Cme12g01861 Cme-Chr12:24866752 0 dispersed
Cme12g01861 Cme-Chr12:24866752 Cme12g01865 Cme-Chr12:24882911 7.86E-169 dispersed
Cme12g01860 Cme-Chr12:24863936 Cme12g01861 Cme-Chr12:24866752 5.21E-17 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65356 PF00069 Pkinase 6.50E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01861 - - cmo:103498644 1312.36