Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01863 ATGGACAAGCTTGGCCAAGGAAGATTTAGCACTGTCTACAAAGGAAAACTACAAGATGGTCAGGACGTGGCAGTGAAACTCTTGAAAGAATCAAGAGAAAACGGCCAAGATTTTATGAATGAAGTTGTTAGCGTCACCAAAACATCGCATGTAAACATAGCCACCCTCTTGGGATTCTGCTATGAGCGAAGTAAAAGGGCTTTAGTTTATGAGTATATGTCTAAGGGGTCATTGGACAACATCATTATTGGTGTGGGTCGAGGCTTAGAGTATTTGCATTGCCGCTGCAACACAAGGATCGTGCATTTTGACATCAAACCAGACAATATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGGCTTGCTAAGCAATGCAGGGCCAAAGAGAGTCATGTGTCAATGACAGGTATGAAAGGAACAGTAGGATTCATGGCGCCTGAAGTAATATTTAGAAATCTTGGCAAAGTTTCCCACAAATCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAGAAAGTATCCCAATGAAGGAATGGGGCAGAGCAGTGAAGAGTATTTTCCTGATTGGATATATAATAAACTTATACAACATGAAATTGGTGAAGGCAGTGTCGATGTCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTGCGACTGATCTACTCCAAGGTGTTGCTGCTTCTTCTTCATCCAACTCCGAAGATTGCGGTGAGAGTTACAATTGCGGCGAATTAGTAAACATCAGGTATCCCTTTTGGGGGAATAGGAAGGAGAGAGTATGCGGGCAGCAAGAATTCAAACTGAACTGCAAGAACAACCAAACCACCACAGTTTACATAAACTCTCTGGAATACAACGTTCTGAGAATCAACCAATCGAATAATAGAATGAGGATAGCAAGATCAGACCTGTTCGAGAATTCCTGCCCAGAAAATGAAATCCAAGTGGCGACTATGAATGGGCATCGGTTCGTGTATTCTTCCAACAATCAGAATATTTCGGTATGGTACAATTGCACGACGGATAACGAAATTCAAATTCCGGATACATACAAATTTTGGTGCGGTGGGAAATGGGAAAAGCTTCGGAGACCGAATTATGCATTCGAGCCGTCGGCGAAGAGTTGGAGTCTAGAAAGGGGGGAATGCGGAATGAACATAGAGGTGATGGTCACGAGAGAGGGGTTGAAAGAAGGTATAAAAGAGAGGAAAAGTTTGGTGGAAAAGGCTGTGAAATGGGGTTTCGATGTAGAATATGAGAATTGGTATAAGGATGCTTGTAATGAATGCAATGAAAATGGAGGCAAATGTGGAGGGAACAACACGTATCCATACTACTGCATTTGTACAAATGGAATTGCTAGTTCTTACGACTGTAAAGCTCCTCTTCTTCCTCTTCTCCCTCCTCCTGCTCCTAATATCATTAGTACGTCTCATTCCCCTTCCTCTCTGTCTTTCATACTTATAATAAACCGTTCTACGTTCTCGTCGTTTTCATAA 1533 41.94 MDKLGQGRFSTVYKGKLQDGQDVAVKLLKESRENGQDFMNEVVSVTKTSHVNIATLLGFCYERSKRALVYEYMSKGSLDNIIIGVGRGLEYLHCRCNTRIVHFDIKPDNILLDNNFCPKISDFGLAKQCRAKESHVSMTGMKGTVGFMAPEVIFRNLGKVSHKSDVYSYGMLVLEMLGERKYPNEGMGQSSEEYFPDWIYNKLIQHEIGEGSVDVLQIPPKPNLFGPPATDLLQGVAASSSSNSEDCGESYNCGELVNIRYPFWGNRKERVCGQQEFKLNCKNNQTTTVYINSLEYNVLRINQSNNRMRIARSDLFENSCPENEIQVATMNGHRFVYSSNNQNISVWYNCTTDNEIQIPDTYKFWCGGKWEKLRRPNYAFEPSAKSWSLERGECGMNIEVMVTREGLKEGIKERKSLVEKAVKWGFDVEYENWYKDACNECNENGGKCGGNNTYPYYCICTNGIASSYDCKAPLLPLLPPPAPNIISTSHSPSSLSFILIINRSTFSSFS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24876373 24879034 + MELO3C002101.2.1 Cme12g01863 345080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01863 510 Pfam Wall-associated receptor kinase galacturonan-binding 247 312 IPR025287 GO:0030247
Cme12g01863 510 Gene3D Transferase(Phosphotransferase) domain 1 72 234 - -
Cme12g01863 510 Gene3D Phosphorylase Kinase; domain 1 4 71 - -
Cme12g01863 510 Pfam Wall-associated receptor kinase C-terminal 378 462 IPR032872 -
Cme12g01863 510 ProSitePatterns Protein kinases ATP-binding region signature. 4 26 IPR017441 GO:0005524
Cme12g01863 510 SUPERFAMILY Protein kinase-like (PK-like) 2 209 IPR011009 -
Cme12g01863 510 PANTHER RUST RESISTANCE KINASE LR10-RELATED 238 462 IPR045874 GO:0004672
Cme12g01863 510 PANTHER - 81 202 - -
Cme12g01863 510 PANTHER - 2 82 - -
Cme12g01863 510 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 82 IPR045874 GO:0004672
Cme12g01863 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 100 112 IPR008271 GO:0004672|GO:0006468
Cme12g01863 510 Pfam Protein kinase domain 2 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01863 510 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01863 510 PANTHER RUST RESISTANCE KINASE LR10-RELATED 81 202 IPR045874 GO:0004672
Cme12g01863 510 PANTHER - 238 462 - -
Cme12g01863 510 SMART serkin_6 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01860 Cme-Chr12:24863936 Cme12g01863 Cme-Chr12:24876373 2.72E-21 dispersed
Cme12g01863 Cme-Chr12:24876373 Cme04g00345 Cme-Chr4:2746282 1.20E-55 dispersed
Cme12g01863 Cme-Chr12:24876373 Cme12g01865 Cme-Chr12:24882911 2.43E-107 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65357 PF00069 Pkinase 1.60E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01863 - - mcha:111008790 517.309