Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01864 ATGGAAGAAGATTATGATAGGAACCGTTTGAACAAAACTAAGCATCCCCATGCTTCTTCCTCCATTCTCCTTCCAAATAATTCTCGTGATCGTCTAATGAAGGCACTTGATCAGCATGGAGAAAATTCCATGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACGAGCTACAGACAAATTTAACACTACCAACGAACTTGGAGATGGTGGCTTTGGCACCGTCTACTACGGCAAACTCCGAGATGGACGTGAGGTTGCAGTTAAACGATTGTTCCAAAATAGCTATAGAAAAGTTGAGCATTTCATGAATGAAGTTGAGATCCTTACTCGTTTGCGCCACCCACATCTAGTCATTCTTTATGGATGCGCCTCTCGACATTGCCGTGAACTATTGTTGGTTTATGAATTTGTACCAAATGGCACAGTTGCCGATCATCTTCACGGCATCCAAGCAAGACCGGGTGAGCTTCCATGGCTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTGCTCTCGCTTTTCTCCATGCTTCAGAAACCATCCACCGCGATGTTAAAACCACCAACATTCTCGTTGACAACAACTTCAATGTCAAAGTTGCCGATTTCGGACTGTCTCGTCTTTTTCCTACACAAGTGACACATGTTTCAACTTCTCCACAAGGATCTCCGGGATATGTTGATCCAGAGTATCAAGAATGTTACCAACTCACAAAGAAAAGCGATGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACGAGGCACAGGCATGAGATTAATCTATCGACAATGGCGATCAACAAGATCCAGAACGGAGAATTAGACGACTTCGTAGACCCATGTCTTGGATTTAAAACAGATGAAAGGATCAGAGACATGATATGCAGAGTAGCAGAGTTGGCATTTCAATGCCTTCAAAGTTTAGAAGAGGTGGGAATCCAAAAGAAGACAGAAGATAGAGACAATCCCCAGATTCTGCCGTTGTGCTTTGGATTACCAGAACTTCAACACCAAATGGCAATGGCTGAGTTTTAA 1068 43.07 MEEDYDRNRLNKTKHPHASSSILLPNNSRDRLMKALDQHGENSMAVPLFSYQELVRATDKFNTTNELGDGGFGTVYYGKLRDGREVAVKRLFQNSYRKVEHFMNEVEILTRLRHPHLVILYGCASRHCRELLLVYEFVPNGTVADHLHGIQARPGELPWLTRLKIAIETASALAFLHASETIHRDVKTTNILVDNNFNVKVADFGLSRLFPTQVTHVSTSPQGSPGYVDPEYQECYQLTKKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNGELDDFVDPCLGFKTDERIRDMICRVAELAFQCLQSLEEVGIQKKTEDRDNPQILPLCFGLPELQHQMAMAEF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24879168 24880552 + MELO3C035551.2.1 Cme12g01864 345081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01864 355 ProSiteProfiles Protein kinase domain profile. 61 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01864 355 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 321 - -
Cme12g01864 355 Gene3D Phosphorylase Kinase; domain 1 33 137 - -
Cme12g01864 355 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01864 355 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Cme12g01864 355 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 321 IPR044652 -
Cme12g01864 355 SUPERFAMILY Protein kinase-like (PK-like) 41 301 IPR011009 -
Cme12g01864 355 MobiDBLite consensus disorder prediction 1 24 - -
Cme12g01864 355 Pfam Protein tyrosine and serine/threonine kinase 63 300 IPR001245 GO:0004672|GO:0006468
Cme12g01864 355 Gene3D Transferase(Phosphotransferase) domain 1 138 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01727 Cme12g01864 CCT
Cme02g01727 Cme12g01864 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01864 Cme-Chr12:24879168 Cme08g00521 Cme-Chr8:3232224 1.66E-82 dispersed
Cme12g01858 Cme-Chr12:24854691 Cme12g01864 Cme-Chr12:24879168 2.97E-180 proximal
Cme12g01864 Cme-Chr12:24879168 Cme02g01727 Cme-Chr2:24275353 2.30E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65358 PF07714 PK_Tyr_Ser-Thr 4.10E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01864 - - cmo:103499026 634.409