Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01865 ATGACACTTACCAACTCAAACAAACAAGACCTTATTGAAGAAACCATCAAAAGATATTCCACACGAATACCAAAGCGATATACTTACTCAACTCTGAAGAAAATCACAGATTCTTTCAAGAACAAGCTTGGCCAAGGAGGGTTCGCCACAGTTTACAAAGGAAAGTTACAAGATGGACGCGACGTGGCCGTAAAACTTCTGAATGAATCCGAAGAAAATTGCCAAGATTTCATCAATGAAGTCATAAGCATCACTACAACTTCCCATGTAAACATAGTCACTTTCTTGGGGTTCTGTTATGAGCGGAACAAAAGAGCTTTGATTTATGAGTACATGCCTAAAGGGTCATTAGACAAATACATATGTCACAAAGGGCTACAAAAAGGTAGAATTGAATTGAATTGGATGACTCTGTATAACATCATTGTGGGCGTGGCTCGAGGATTAGAATACTTGCATCGTGGCTGCAATACAAGGATTCTACATTTTGATATCAAGCCACACAACATTCTTTTGGACGATGAGTTTTGCCCCAAGATCTCCGACTTTGGGCTTTCGAAGCAGTGGAAGGCAAAAGAGAGTCATGTGTCGATGTCAGGTGTAAAGGGGACAATAGGATTCATGGCTCCGGAAGTAGTACAAAGAAGATATGGCAAAGTTCCACACAAGTCTGATGTTTATAGCTATGGAATGTTGATTCTTGAGGTGGTTGGTGAAAGGCAAAGCCCTAATAAAGGAGTGGGAGACCATAGTGAAGAGTATTTTCCTGATTGGATATACAAGAATCTTGCAGAATGTGAAATGTATAGAAATTGTAGGCAGTGGGGAGAAACAGAGGAAGAAGAAGAAATAGCTAGAAAATTGGTGGTTGTGGGTTTGAATTGCATTCGAACATTGCCGGACGACCGACCGTCCATGACTGAGGTAGTCGCCATGTTGGAAGGGAATGTTGATGGATTACCCATTCCCTCGAAACGGACCCTCTTCTTACATCCTCCAACTGTTTCTTCTTCTACCTCATATTTAGAACACTAG 1035 41.16 MTLTNSNKQDLIEETIKRYSTRIPKRYTYSTLKKITDSFKNKLGQGGFATVYKGKLQDGRDVAVKLLNESEENCQDFINEVISITTTSHVNIVTFLGFCYERNKRALIYEYMPKGSLDKYICHKGLQKGRIELNWMTLYNIIVGVARGLEYLHRGCNTRILHFDIKPHNILLDDEFCPKISDFGLSKQWKAKESHVSMSGVKGTIGFMAPEVVQRRYGKVPHKSDVYSYGMLILEVVGERQSPNKGVGDHSEEYFPDWIYKNLAECEMYRNCRQWGETEEEEEIARKLVVVGLNCIRTLPDDRPSMTEVVAMLEGNVDGLPIPSKRTLFLHPPTVSSSTSYLEH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24882911 24883945 + MELO3C002100.2.1 Cme12g01865 345082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01865 344 PIRSF ILK 6 321 - -
Cme12g01865 344 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Cme12g01865 344 PANTHER - 4 333 - -
Cme12g01865 344 SMART serkin_6 37 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01865 344 ProSiteProfiles Protein kinase domain profile. 37 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01865 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Cme12g01865 344 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Cme12g01865 344 Gene3D Phosphorylase Kinase; domain 1 9 111 - -
Cme12g01865 344 Pfam Protein tyrosine and serine/threonine kinase 39 313 IPR001245 GO:0004672|GO:0006468
Cme12g01865 344 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 333 IPR045874 GO:0004672
Cme12g01865 344 Gene3D Transferase(Phosphotransferase) domain 1 112 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01861 Cme-Chr12:24866752 Cme12g01865 Cme-Chr12:24882911 7.86E-169 dispersed
Cme12g01865 Cme-Chr12:24882911 Cme04g00345 Cme-Chr4:2746282 7.36E-80 dispersed
Cme12g01863 Cme-Chr12:24876373 Cme12g01865 Cme-Chr12:24882911 2.43E-107 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65359 PF07714 PK_Tyr_Ser-Thr 2.00E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01865 - - cmo:103499200 708.753