Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01867 ATGGCGGAGCCGACGGGGAAGGTTCAGTTTCATCATCAACAACTCAGTAGCCTTATATCGCACTTTCTTGTGTTCGGGTTAGGATTGGTTATTGGGACTAGTTTTCATTTCTCGATCAGCGGTAGTTTAATTTCTTCCAGTAATTTTGAGCTGATGAGACAGTACTGGCCGGTTACTCCGCCGCAACCGGCACCGGTGGTGGTGGGGATGAGAGAATTTAGGAGCTCAAAAAGTGTGGGGCAAGAGATGATGATGAGTAGTAGTGAGGGCCCTCATCCCCCGGGGGATCAGTTGGTTCACCGGATGAGAGGGTTACCGGCGGTGAAAGGAATTATTAGGGGGAAGGTGGCGTTCATGTTTTTAACGAGAGGGGATTTGCCGTTGAGGCCATTTTGGGAAAGGTTTTTCAATGGAAACGAAGGATTATACTCAATTTATGTGCATTCTGATCCTTCTTTCAATGCAACTTTCCCATTAAATTCTGTCTTTCATGGACGTACCATACCTAGCAAGGTAGTTGAATGGGGGCAACCAAGCATGATTGAAGCGGAGCGACGGCTCTTATCCAACGCTCTTCTCGACGTCTCTAACCAACGATTCCTCCTTCTTTCCGAGTCCTGCATTCCCGTCTTCAACTTCACCACCGTCTACACTTATCTAATGGGGTCGGCTCATATCTTCGTCGAGTCCTACGACTTACCTGGCCGTTTGGGCAGAAACCGGTACAGGTCCAAAATGCAGCCAACAATCATTGAGACCCAATGGAGGAAAGGCTCCCAGTGGTTCGAAATGGACCGACGGACGGCGACGGTGGTGGTGGAGGACCGGAAGTACTTCCCACTGTTCCAAAAGTACTGCCGCCCGAATTGCATTTCGGATGAGCATTATTTGGCGACGATGATGAGTATAGAGTTCGGGGAAAGGAATTCGAACCGGACGCTGACTTGGACGGATTGGTCGAAGCATGGGCCTCACCCGACGGGGTTCGAGAGCGAGGATGTGACGGTTGAGCTTTTGGAGAGGATACGGGACGGCAGCATGTGCGAGTATAATGGAGAAAGAAGTAGAATTTGTTATTTGTTTGCGAGAAAGTTCATGGGAAGTGCTTTGAATCGGCTGCTGGAAATTGCTTCTCAAATCATGTTCATCCATTGA 1155 49.09 MAEPTGKVQFHHQQLSSLISHFLVFGLGLVIGTSFHFSISGSLISSSNFELMRQYWPVTPPQPAPVVVGMREFRSSKSVGQEMMMSSSEGPHPPGDQLVHRMRGLPAVKGIIRGKVAFMFLTRGDLPLRPFWERFFNGNEGLYSIYVHSDPSFNATFPLNSVFHGRTIPSKVVEWGQPSMIEAERRLLSNALLDVSNQRFLLLSESCIPVFNFTTVYTYLMGSAHIFVESYDLPGRLGRNRYRSKMQPTIIETQWRKGSQWFEMDRRTATVVVEDRKYFPLFQKYCRPNCISDEHYLATMMSIEFGERNSNRTLTWTDWSKHGPHPTGFESEDVTVELLERIRDGSMCEYNGERSRICYLFARKFMGSALNRLLEIASQIMFIH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24901650 24904536 - MELO3C002098.2.1 Cme12g01867 345084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01867 384 PANTHER CORE-2/I-BRANCHING ENZYME 12 381 - -
Cme12g01867 384 Pfam Core-2/I-Branching enzyme 116 343 IPR003406 GO:0016020|GO:0016757
Cme12g01867 384 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 12 381 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01867 - - - csv:101207320 640.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00841 Cme-Chr11:11011242 Cme12g01867 Cme-Chr12:24901650 1.38E-62 dispersed
Cme12g01867 Cme-Chr12:24901650 Cme03g01683 Cme-Chr3:25557340 7.71E-67 dispersed
Cme12g01867 Cme-Chr12:24901650 Cme12g01868 Cme-Chr12:24906240 3.36E-108 tandem
Cme02g00842 Cme-Chr2:10999939 Cme12g01867 Cme-Chr12:24901650 8.29E-43 transposed
Cme12g01867 Cme-Chr12:24901650 Cme02g01728 Cme-Chr2:24280322 4.32E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014703 0 1 0 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 1 1 1 2 1 0 1 0 1 0 18