Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01873 ATGGGGCTTTTGTGTTCTTTCTGCGTCTGCTTGCAGAAAAAACTTAAAGCTGCTAATTCTGCCGGTGCCGACAAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTGAATACTTTGCAAATTGCTACTAATTTCTTTTCCGAGGCGAATAAGCTCGGCAATGGAGGGTTTGGACCCGTCTACAAGGGTTTGATGCCAAATGGCCAACAAGTAGCAGTCAAGAAGCTGTCGATAGATTCAAGACAAGGAGTGAAGCAATTTAGTAATGAAGTGAAACTTCTATTGAGAATTCAGCACAGAAATTTGGTCATTTTATTGGGCTGTTGTGTGGAAGGACCTGAAAAGATGCTTGTGTATGAATACTTGCCAAACAGAAGTCTTGATTACTTTATTTTTGATAAAAAGAAGTCTCGATCCTTGGATTGGACAACACGGTTCCATATAATTACGGGTATTGTGAAAGGTCTTCTCTACTTACATGAAGAAGCTCCTTCAAGAATTATACATAGAGATATCAAAGCTAGCAACATATTATTAGATGAGAAATTGAATCCGAAAATCTCAGATTTCGGACTAGCACGACTTTTTCCTGGAGAAGATACGCATTTAAATACATTTAGGATCGCTGGCACTCATGGCTATATGGCTCCTGAGTACGCAATTCATGGGTATTTATCTGTAAAGAGCGACATTTTCAGTTTTGGTATCTTGGTATTGGAGATTGTTAGTGGAAGAAAAAATCACGACGTTCAACTTGGTGGACAACAAATTGACCTCTTGGGATATGCATGGTTGCTTTACCAAGAAGGAAAGATTTTAGAATTAGTCGATCAAAGCCTAACAAAATACAACGTAGATGAGGCAGCTATGTGCATACAGTTGGGTTTGTTGTGTTGTCAAGCAAGTGTTACGGATAGGCCTGATATGAATACAACTCATCTCATGCTTTCTAGTGATTCATTCACGTTGCCGAAACCTGGAAAGCCAGGAATTCATGGTCGAGCACCACGTCGAACAACTACCTCTACTTCGGGTTTCACCAAGACAAATACTAGTACACAAAGTGGCGTTACCAAAGCCTCTACTAGTAATAGTTTGATGGAAGATTATTCAAGGAATTCCATATCCGTTTCTTCCTTTGATGAAGGCAGGTGA 1164 39.86 MGLLCSFCVCLQKKLKAANSAGADKADDEDVSTDIFFELNTLQIATNFFSEANKLGNGGFGPVYKGLMPNGQQVAVKKLSIDSRQGVKQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFDKKKSRSLDWTTRFHIITGIVKGLLYLHEEAPSRIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHLNTFRIAGTHGYMAPEYAIHGYLSVKSDIFSFGILVLEIVSGRKNHDVQLGGQQIDLLGYAWLLYQEGKILELVDQSLTKYNVDEAAMCIQLGLLCCQASVTDRPDMNTTHLMLSSDSFTLPKPGKPGIHGRAPRRTTTSTSGFTKTNTSTQSGVTKASTSNSLMEDYSRNSISVSSFDEGR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24926920 24931700 + MELO3C002092.2.1 Cme12g01873 345090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01873 387 MobiDBLite consensus disorder prediction 324 368 - -
Cme12g01873 387 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 385 - -
Cme12g01873 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Cme12g01873 387 Gene3D Transferase(Phosphotransferase) domain 1 125 325 - -
Cme12g01873 387 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 385 - -
Cme12g01873 387 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Cme12g01873 387 CDD STKc_IRAK 55 314 - -
Cme12g01873 387 ProSiteProfiles Protein kinase domain profile. 49 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01873 387 Pfam Protein kinase domain 50 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01873 387 MobiDBLite consensus disorder prediction 339 368 - -
Cme12g01873 387 SUPERFAMILY Protein kinase-like (PK-like) 35 317 IPR011009 -
Cme12g01873 387 SMART serkin_6 49 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01732 Cme12g01873 CCT
Cme02g01732 Cme12g01873 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01593 Cme-Chr10:21059568 Cme12g01873 Cme-Chr12:24926920 1.32E-90 dispersed
Cme12g01873 Cme-Chr12:24926920 Cme12g01411 Cme-Chr12:21964354 1.07E-114 dispersed
Cme12g01873 Cme-Chr12:24926920 Cme08g00374 Cme-Chr8:2320685 1.53E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65360 PF00069 Pkinase 4.30E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01873 - - csv:101214463 721.85