Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01876 | ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATCATATAGATCCCAACCAAAACCCAAACCTTAATTTTCTTGACAACATTCCAATTTGGTTCAGTGACAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAACTGGGGAGAAAATTTCCAAGGAATTTTCTCTCAAGCCAATCAGATCATAACTCCCATTTCTTCTCCTGTTTTTGAGCCAAAAGATCCATTTGGAAATGACCTCCATGGAAGCATCAAGAAAAGAAAGCTTGAAAATAACGATGCATATGAAAGCAGCTCTGGCAACTCAACCCCTCAAGTTTCTGAAAATGGGATCAACACAAAAAATAACAATGGAAAAGGGAAGCGGTCGAAAAAAGGCGACACATACGACGGCGACAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTACAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGGCAAGCTGAAGGGAAAGGAAATGAGAGAAGGAAATGGAGGATCAATGATTGCATCATCAACTCAACTTGGTGCCTTTGACTTGTGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA | 834 | 39.69 | MADFTPNFQSLKPSSFPLMDHIDPNQNPNLNFLDNIPIWFSDSFFNNQTAVPSPRFLENWGENFQGIFSQANQIITPISSPVFEPKDPFGNDLHGSIKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKGKRSKKGDTYDGDKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEGKLKGKEMREGNGGSMIASSTQLGAFDLCFGSYSTLPFNTI | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 24949054 | 24950906 | + | MELO3C002089.2.1 | Cme12g01876 | 345093 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01876 | 277 | Gene3D | - | 156 | 228 | IPR036638 | GO:0046983 | |
Cme12g01876 | 277 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 159 | 209 | IPR011598 | GO:0046983 | |
Cme12g01876 | 277 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 2 | 247 | - | - | |
Cme12g01876 | 277 | MobiDBLite | consensus disorder prediction | 107 | 130 | - | - | |
Cme12g01876 | 277 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 247 | IPR024097 | GO:0006355 | |
Cme12g01876 | 277 | MobiDBLite | consensus disorder prediction | 102 | 166 | - | - | |
Cme12g01876 | 277 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 157 | 227 | IPR036638 | GO:0046983 | |
Cme12g01876 | 277 | MobiDBLite | consensus disorder prediction | 133 | 166 | - | - | |
Cme12g01876 | 277 | CDD | bHLH_AtBPE_like | 149 | 234 | - | - | |
Cme12g01876 | 277 | SMART | finulus | 165 | 215 | IPR011598 | GO:0046983 | |
Cme12g01876 | 277 | Pfam | Helix-loop-helix DNA-binding domain | 163 | 210 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01735 | Cme12g01876 | CCT | |
Cme02g01735 | Cme12g01876 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g01593 | Cme-Chr6:16349486 | Cme12g01876 | Cme-Chr12:24949054 | 7.23E-34 | dispersed | |
Cme12g01565 | Cme-Chr12:23037307 | Cme12g01876 | Cme-Chr12:24949054 | 1.72E-37 | dispersed | |
Cme12g01876 | Cme-Chr12:24949054 | Cme10g00327 | Cme-Chr10:2169290 | 6.36E-35 | dispersed | |
Cme12g01876 | Cme-Chr12:24949054 | Cme02g01735 | Cme-Chr2:24345556 | 5.33E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42375 | PF00010 | HLH | 5.40E-05 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01876 | - | - | csv:101213736 | 495.352 |