Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01876 ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATCATATAGATCCCAACCAAAACCCAAACCTTAATTTTCTTGACAACATTCCAATTTGGTTCAGTGACAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAACTGGGGAGAAAATTTCCAAGGAATTTTCTCTCAAGCCAATCAGATCATAACTCCCATTTCTTCTCCTGTTTTTGAGCCAAAAGATCCATTTGGAAATGACCTCCATGGAAGCATCAAGAAAAGAAAGCTTGAAAATAACGATGCATATGAAAGCAGCTCTGGCAACTCAACCCCTCAAGTTTCTGAAAATGGGATCAACACAAAAAATAACAATGGAAAAGGGAAGCGGTCGAAAAAAGGCGACACATACGACGGCGACAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTACAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGGCAAGCTGAAGGGAAAGGAAATGAGAGAAGGAAATGGAGGATCAATGATTGCATCATCAACTCAACTTGGTGCCTTTGACTTGTGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 834 39.69 MADFTPNFQSLKPSSFPLMDHIDPNQNPNLNFLDNIPIWFSDSFFNNQTAVPSPRFLENWGENFQGIFSQANQIITPISSPVFEPKDPFGNDLHGSIKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKGKRSKKGDTYDGDKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEGKLKGKEMREGNGGSMIASSTQLGAFDLCFGSYSTLPFNTI 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24949054 24950906 + MELO3C002089.2.1 Cme12g01876 345093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01876 277 Gene3D - 156 228 IPR036638 GO:0046983
Cme12g01876 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Cme12g01876 277 PANTHER TRANSCRIPTION FACTOR BEE 1 2 247 - -
Cme12g01876 277 MobiDBLite consensus disorder prediction 107 130 - -
Cme12g01876 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 247 IPR024097 GO:0006355
Cme12g01876 277 MobiDBLite consensus disorder prediction 102 166 - -
Cme12g01876 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 227 IPR036638 GO:0046983
Cme12g01876 277 MobiDBLite consensus disorder prediction 133 166 - -
Cme12g01876 277 CDD bHLH_AtBPE_like 149 234 - -
Cme12g01876 277 SMART finulus 165 215 IPR011598 GO:0046983
Cme12g01876 277 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01735 Cme12g01876 CCT
Cme02g01735 Cme12g01876 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01593 Cme-Chr6:16349486 Cme12g01876 Cme-Chr12:24949054 7.23E-34 dispersed
Cme12g01565 Cme-Chr12:23037307 Cme12g01876 Cme-Chr12:24949054 1.72E-37 dispersed
Cme12g01876 Cme-Chr12:24949054 Cme10g00327 Cme-Chr10:2169290 6.36E-35 dispersed
Cme12g01876 Cme-Chr12:24949054 Cme02g01735 Cme-Chr2:24345556 5.33E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42375 PF00010 HLH 5.40E-05 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01876 - - csv:101213736 495.352