Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01886 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGGCCGGAGATTCGTACTCTAGATGGAAACAAGGGATTTCATGGATTCGGTTACTTGTATTTACCATCTCTTCTCGACCAGTATCCTCCTTCCAACAATTCTCGTTGTTCTCCTCCACCACCTCAGCTCCCAACGTGTGTTTTACCAGCTGGGGTTGAGTTTTTTTCATCGGGATTTGATTCCAGTGACGCCAGCACTTTTCCGCGGAGTTATCCGATTGTTTTGACTGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTAGTGAGGACATTGCTGAAGCTTATCGCATTCCACCGAATTCTTATGCTGATAAATGTATCTGTATTGTTTCGCGTTCACCGAGCTTCCGTGTACTTAAAGATGCATTGGAGGAACTATTTGCATTGTGCTTCTCCAACAGTGGAAGTAGCAAGCCTCTGTGGGATATTATAGCACACATAGTCTCCAATGTACCACTGTCTACTCCTGGGAAGGATCGGATTTTGTTTGGTATTGAGAATTGCCTTCTTTCCGTTCAGGCTCCGTCCAAAGATGGGCTTCCCTATGCTGACATTTCATTTCAGCCGCTTATGCAATGCTTAGATTTGGAAAATGTAATCAAACTTTTCACTGCTGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTCCTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTACATTGATGCTCCCACACCATATATGATGGGTCTTCATTCAGGCGTTGATACATCTTACCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACTACTGAGGAAATACCACCTATTCCAGAACCAGAACTCGGATCTTTGCGTAGCGAGCTGATGAAGTTATTATATCCCAATGTTGTTAGCATAGATCAAATGAGGTCTGATTTGCGTAGCGCATCTGAACAGTACCCTAGAGGTAGCAGCAAACCTTGGGGAGAAGACCATGACCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTGTAGAAAGCAATGCAACTGATGTCTTCAATACACAAGCATTCTTGAAGAAGCGTTCACGATCGACTAATCAACCAGAAGATCCCATGATAACTCAATTCCTAGAGTCCCAAGGGTTTCTAGACTATCTAGAGAGATGCATAGGTTCTGATGAAAGTAATAATAATATTCTGGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCGATTCTTCCGCCATTGGTTGAACCTGAGATTATAACAATCTCTGACCCTGATTTGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCAAACATTAGAACTGAGGAGCAGGAAGAAAAGCGAAAACAAATTCTAGCAGCAGCAAGTGGAGCTTTTGAATACTCTGGAAAACATAATCCTAATTCACCTTCTATGGCGACGGGCAAGGATCTGAAATCAGAAACCCTCAGTCCAATGGAGAGACAGGCTGAAAGAGATCGCATGGTTTTGGACATTAAAGTCAAGCTACAGGGTCTCTGGCTACGCCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTTGCTTTGATCGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGCATTAGAGAGCACATAAATACGGGATGGCTTGGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGAGATGCCCTTGAGGTGTCTGGTGAAATGTTCAAGAAAGACCCCAATAATGTTCCCGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACGGTCTTCAAATAAAAGCGCCAATTATGCATCTCAGGTTTCTGCACAGCTAATTGTTATGGCATCACATATGGCTGGGCTTGGGCTTCCTGACACTGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATTGGATACAAGCAACTCATAAAGCTCCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTTCTGTTAAGTCTCAGTCCATATCTCCTCATGCATTGCCATCTCCACGCCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGTTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGCTTAACTTGGGTCGTAGTGGCCGTTGGTCTTCTGATGCCACAAGTGAGAGCGGTACTCCTCCACGACAAGATTTATCCTCAGCCGGGCAGAAAAAAGTTCAAAGCAATATTCGCGTTCTTAGGGGTCATAGTGGAGCTGTGACGGCACTTCACTGTGTTACGAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGTAGCACGGACTGCTCGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAGTTGCGAGCAACTTTAAAGGGCCACACAGGACCTGTTCGTGCGATTAACTCTGATCGAGTAAAAGTGGTTTCTGGGTCTGATGATCAGTCAGTGATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGTGTTCGTATGCTATCAGGTGAACGTGTCCTTACGGCTGCACATGATGGAACCGTGAAAATGTGGGATGTCAGAACTGATACTTGTGTGGCAACTGTTGGTCGTTGCTCTAGTGCAGTTCTATGCATGGAATATGATGACTCTACGGGAATACTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACAAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAGTTACCGGTAGTGATGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTGGCATGCCATGCTGGCCCAATCTTGGCTGTCGAGTATTCTGCACTGGATAAAGGAATAATAACTGGTTCAACTGATGGACTTCTCCGTTTTTGGGAAAACGAGGATGGGGGTATTAGATGTGTGAAGAATGTCACCATTCACAGTGCTGCCATACTGTCAATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCTCTCTTCCATCGGCCACAAGAGAGACTCGGAGGCTTCTCTAACACGGGTGCAAAAATGGCTGGGTGGCAGCTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGGTGTGCAGCTTCAGACCTCGAAAGGAAACGAATATGCACTGGTGGTCGTAATGGCCTTCTAAGGCTCTGGGAAGCAACGATCAACATCTGA 3630 44.49 MARIFEYFVVCGIGPEIRTLDGNKGFHGFGYLYLPSLLDQYPPSNNSRCSPPPPQLPTCVLPAGVEFFSSGFDSSDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRIPPNSYADKCICIVSRSPSFRVLKDALEELFALCFSNSGSSKPLWDIIAHIVSNVPLSTPGKDRILFGIENCLLSVQAPSKDGLPYADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEEIPPIPEPELGSLRSELMKLLYPNVVSIDQMRSDLRSASEQYPRGSSKPWGEDHDLQLRLIFLKFFASLLSGYRNFVESNATDVFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPPLVEPEIITISDPDLGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMATGKDLKSETLSPMERQAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLGQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMFKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKSANYASQVSAQLIVMASHMAGLGLPDTDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSVKSQSISPHALPSPRPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARLNLGRSGRWSSDATSESGTPPRQDLSSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTGPVRAINSDRVKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSALDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLLRLWEATINI 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25023863 25036072 + MELO3C002081.2.1 Cme12g01886 345103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01886 1209 ProSitePatterns Trp-Asp (WD) repeats signature. 968 982 IPR019775 -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 880 898 IPR001680 GO:0005515
Cme12g01886 1209 SMART dDENN_cls 366 434 IPR005112 -
Cme12g01886 1209 CDD WD40 850 1146 - -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1073 1105 - -
Cme12g01886 1209 MobiDBLite consensus disorder prediction 773 795 - -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 949 IPR001680 GO:0005515
Cme12g01886 1209 SMART uDENN_cls 1 104 IPR005113 -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 950 984 - -
Cme12g01886 1209 SMART DENN_cls 122 306 IPR001194 -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 990 IPR001680 GO:0005515
Cme12g01886 1209 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1209 - -
Cme12g01886 1209 Pfam uDENN domain 35 103 IPR005113 -
Cme12g01886 1209 Pfam WD domain, G-beta repeat 1028 1063 IPR001680 GO:0005515
Cme12g01886 1209 Pfam WD domain, G-beta repeat 849 898 IPR001680 GO:0005515
Cme12g01886 1209 Pfam WD domain, G-beta repeat 908 940 IPR001680 GO:0005515
Cme12g01886 1209 Pfam WD domain, G-beta repeat 945 981 IPR001680 GO:0005515
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 1033 1072 IPR001680 GO:0005515
Cme12g01886 1209 Gene3D - 839 995 IPR015943 GO:0005515
Cme12g01886 1209 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1209 - -
Cme12g01886 1209 MobiDBLite consensus disorder prediction 519 535 - -
Cme12g01886 1209 SUPERFAMILY WD40 repeat-like 851 1204 IPR036322 GO:0005515
Cme12g01886 1209 Pfam dDENN domain 397 447 IPR005112 -
Cme12g01886 1209 SMART WD40_4 903 940 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 984 1023 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 1110 1147 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 1066 1105 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 847 898 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 1165 1204 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 1026 1063 IPR001680 GO:0005515
Cme12g01886 1209 SMART WD40_4 943 981 IPR001680 GO:0005515
Cme12g01886 1209 Gene3D - 996 1208 IPR015943 GO:0005515
Cme12g01886 1209 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Cme12g01886 1209 Gene3D - 1 172 - -
Cme12g01886 1209 PRINTS G protein beta WD-40 repeat signature 927 941 IPR020472 -
Cme12g01886 1209 PRINTS G protein beta WD-40 repeat signature 968 982 IPR020472 -
Cme12g01886 1209 PRINTS G protein beta WD-40 repeat signature 1050 1064 IPR020472 -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 940 - -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 995 1032 IPR001680 GO:0005515
Cme12g01886 1209 MobiDBLite consensus disorder prediction 817 847 - -
Cme12g01886 1209 Gene3D - 202 387 IPR043153 -
Cme12g01886 1209 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Cme12g01886 1209 ProSitePatterns Trp-Asp (WD) repeats signature. 1010 1024 IPR019775 -
Cme12g01886 1209 MobiDBLite consensus disorder prediction 517 539 - -
Cme12g01886 1209 ProSiteProfiles Trp-Asp (WD) repeats profile. 1073 1105 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01886 - - - csv:101212131 2356.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01118 Cme-Chr4:15240204 Cme12g01886 Cme-Chr12:25023863 2.53E-14 dispersed
Cme12g01886 Cme-Chr12:25023863 Cme12g01390 Cme-Chr12:21793145 5.82E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30