Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01894 ATGGCCAAGCCTCGCAAGCCCAAAAACACCGACGACGCCAAGCCACCTGATAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTCTGTCTTTCCATCGACATTGATAATCGTCGCGTTTATGGGTTCACCGAGTTGGAAATTGCGGTTCCTGATATTGGTATAGTTGGGTTGCACGCGGAGAATCTTGGGATTTTGAGTGTTTCAGTGGATGGTGACCCAACTGAATTTGAGTATTATCCGCGGCCTCAGCATGTGGAAAGTGAGAGGAGTTTTAAAGCAGTTGCGTCGCCGAGCTCTGCTGCAGATGCTGCAGGGTCAATTTATATGTCTTCAATCGAGAAGGAATTGGTTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAGTGGAAGCGAGCAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAACCTGCGGACGAGGACAAGCAGAATGTAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGAGGTAGGTATTCACTTCTATAATCGTCTGGCTCACACTGACAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGTCTACAACGATGCAAGTATGACCTCGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTTTGTTGTACCAGGTCTTGAGCAAAGACAATCCTCCCCGCAAAACTTATGTGTATAGGGTAGACATCCCTGTCAATGCACGTTGGATATCACTTGCCGTTGGACCATTTGAAATCCTTGCTGATCACCAAAATGTACTGATATCACACATGTGCTCGCCTGTTAATTCTTTAAAGCTCAAGCATACGGTGGATTTTTTTCATGGTGCATTCAGCTGCTATAAGGATTACCTCTCGGTGGACTTCCCATTTGGGTCATATAAACAAATCTTCATAGAGCCGGAGATTGCAGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATTGATCAGACCATTGATACGAGGATTAAACTTGCTTATGCTCTGGCAAGACAGTGGTTTGGCATTTATATTACACCTGAAGCCCCAAATGATGAGTGGTTGTTGGATGGTCTTGCTGGTTTTTTGACTGATTTATTTATTAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAGAGATACAAGGCAAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTTTGACCACCTTGAGTTCCTCCGCTGCTTGTAAAGATTTGCATGGGACCCAATGTATTGGTATATATGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAATCTTTCCGCAAGATTCTACAAAATATTGTTTCTCATGCTAAAGATACTGGTTCTGCGTCACAATTACTCAGCACGAAAGAGTTTCGTCAATTAGCCAATAAGATTGGAAACCTAGAGCGACCATTTCTTAAAGAGTTCTTTCCTCGATGGGTTGAATCTTGTGGTTGTCCACTGCTGAGGATGGGGTTTTCCTACAACAAGCGGAAAAATATGGTTGAAATGGCGGTTTCACGGGAATGCACAGCTACACCAGCCACAAGTGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGCATGATGAGTATCAGGATTTATGAACTTGATGGTGTCTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCTTGGCAACTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGGCGCCTCCAGAAAACTAAAAAAGGGTCAAAACCTGATGGTTCTGACGACAATGCTGATATACCTGCACTCGACATTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAGCCTGTTCAGATGTGGATCAATCAATTAGAGAAGGACAAGGATGTCATTGCCCAAGCACAAGCAATTGCGACATTAGAGATGTTGCCTCAACCGTCTTTTTCTATTGTTAATGCTCTTAACAATTTCCTAAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAGTCAGAGGTTTGATGCTGATACTGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAATATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGGCACCGACCAAAAAAGCCCTAGAGAAGCCGTTGAGTTTGTTTTGCAACTTTTGAAGTACAATGACAACAATGGGAATCCTTACTCTGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAGTTGGTGAGCTTGAATTTGGACAACAGAGCATTCTCTTTTTAGCATCGCTTCTTAAAAGGATTGATAGACTTCTGCAGTTTGACAGGCTGATGCCTAGCTATAATGGGATATTGACTATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCATCGAACTGATAAGACCTTTTCGAGATTTTAATTCCATATGGCAAGTTCGAATTGAGGCAACCCGATCACTTCTCGATCTTGAGTACCACTGCAACGGAATTGATGCAACATTGTTATTGTTTATTAAATATCTAGAAGAAGAGAATTCCTTGCGAGGGCAAGCGAAGCTGGCGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGGTTCAAATGATGTAGTCAATAATGACACCCTTGTTGCTTTGCTCCTCCTATTGGAAGGCAATATGGCGTTTAACAATGTCTGTCTTCGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGGAGGCCCCCAACACTTTATGGAGTTCCAAGAGAATATAAAACATTGCATATGGGAGACACGGGAACTTGCAGTGAACAGAAAAGGATGTTAACTTCTCTCATTCCTGAATTCAATCCGCCAGAGCAATCATCAGTCTCTGCAGTTGCGCCTATGCCATGTATTCCAGCAAGTCTTTCATCAGAGCCGCTTCATGCTCCCACTCCGAGGCCTGACAGCTTGGCAGTTCCCGAGCTTTCCAAGGAAGGAGGAGAAATTGCAGAGGTTCCTAAGCAAGCTATGGCAATAGTAGAAGCTCCGAGAGAAGCAGCCTCTGTTTCCAGTAGTCATGAGAGGAAGTTGCCAGTCGTTAAGATCAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCCGATAATCTAACCACTGAAAGATCGCATGCTGTGCCTCGTGAAACAGATGTTGGTCCTAGTAGTTCTGTTTCTGTTGATGCACCCCCAAGAAATATTGCTGAGGCTACAAGTATCAGCAACCGTATTCTGGAGGAGGTAAACTCCTGTCATGATCACGGGTCTCATATGACAGCCAGCATTGGCAGTGCAAAACTTGCAAGTTATGGTGATGAACTTGGGAAGGAATTCCAGTGCACTGCTGATTCCAGCAGTCGAGCTTTTGGACATTTTCAGCCAGAAGATCCTTCATCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACGCTTTCTTTACCACAGAATGATCATGGCTTAGCCTCTTCGCACTCTCGCCATGGGAAAAAGGAAAAGAAGAAAGATAAAGAAAAGAAACGTAAGCGAGAAAGTCATAAAGAACATCGCAATGATCCTGAATACATCGAGCGCAAGCGACTAAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAAGAGGTGAAGCCACAGCCACTTGCAATGCCTCGTATAAAAGAACCACCAACGAAGTCAACTCCCATGCAATTGGAAACAAATGAACCTAGTGGATCAAGATTAATCATAGGAGTTCAAAGTAAGCCGGAGGCATCAGAAGGTACGACTTCTGCTGCCCCCAAACTTAGAATTAAATTTAAAAACCGAACGTTGAACAATTCATAA 4086 43.25 MAKPRKPKNTDDAKPPDNSGAVVRHQKLCLSIDIDNRRVYGFTELEIAVPDIGIVGLHAENLGILSVSVDGDPTEFEYYPRPQHVESERSFKAVASPSSAADAAGSIYMSSIEKELVPNLLINCCKAFKSGSEQQDQPFLENGVQPADEDKQNVRLVRIDYWVEKSEVGIHFYNRLAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPRKTYVYRVDIPVNARWISLAVGPFEILADHQNVLISHMCSPVNSLKLKHTVDFFHGAFSCYKDYLSVDFPFGSYKQIFIEPEIAVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLSSSAACKDLHGTQCIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSHAKDTGSASQLLSTKEFRQLANKIGNLERPFLKEFFPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTATPATSVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDIRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAIATLEMLPQPSFSIVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRGTDQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIIELIRPFRDFNSIWQVRIEATRSLLDLEYHCNGIDATLLLFIKYLEEENSLRGQAKLAVHVMRLCQIMRRSGSNDVVNNDTLVALLLLLEGNMAFNNVCLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDTGTCSEQKRMLTSLIPEFNPPEQSSVSAVAPMPCIPASLSSEPLHAPTPRPDSLAVPELSKEGGEIAEVPKQAMAIVEAPREAASVSSSHERKLPVVKIKVRSSAATSRADADNLTTERSHAVPRETDVGPSSSVSVDAPPRNIAEATSISNRILEEVNSCHDHGSHMTASIGSAKLASYGDELGKEFQCTADSSSRAFGHFQPEDPSSSSIIQDNNIDADAQKYASLQTLSLPQNDHGLASSHSRHGKKEKKKDKEKKRKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPQPLAMPRIKEPPTKSTPMQLETNEPSGSRLIIGVQSKPEASEGTTSAAPKLRIKFKNRTLNNS 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25090713 25113442 - MELO3C002074.2.1 Cme12g01894 345111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1 20 - -
Cme12g01894 1361 Coils Coil 1272 1297 - -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 596 615 - -
Cme12g01894 1361 Gene3D tricorn interacting facor f3 domain 21 253 IPR042097 -
Cme12g01894 1361 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 12 254 IPR042097 -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1100 1140 - -
Cme12g01894 1361 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 263 516 - -
Cme12g01894 1361 Gene3D Neutral Protease Domain 2 259 511 IPR027268 -
Cme12g01894 1361 Pfam Peptidase family M1 domain 284 480 IPR014782 GO:0008237|GO:0008270
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1124 1140 - -
Cme12g01894 1361 CDD M1_like_TAF2 25 507 - -
Cme12g01894 1361 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 20 1294 IPR037813 GO:0005669
Cme12g01894 1361 SUPERFAMILY ARM repeat 446 979 IPR016024 -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1261 1293 - -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1231 1326 - -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 1242 1260 - -
Cme12g01894 1361 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01894 K03128 TAF2; transcription initiation factor TFIID subunit 2 - csv:101210662 2575.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32