Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g01900 | ATGTCTTTTCTCCTCTGTTATTCACCCTTCAAACCTCTCCCACTTGCTTTCTTCTTCCTCATCCTCCTCTCCTTCCATTTCCTCCCAGCAATCAGCACTGATTTCCTTGTCGGCGACAGCGATGGCTGGTCAGTCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATGTCGATGACACTGTCCATTTCAAGTACGAGAAAGATTCAGTGATGATGGTGACGGAGGAAGAGTACAAACAATGCGTTTCACCAAAGCCTCTGTTTTATGAAAACAATGGAGATAGTGTGGTAAAGCTTGACAGAGCAGGATTGTTCTATTTCATTAGTGGAGTTTCAGGGCATTGTCAGAAAGGTCAAAGAATGATAATCAAAGTGTTGGAACCTATGAGTCCTCCACAGCCATCCACTGTTCCACCTGAAGAAAAAAATGGTGCTGCACATTCCAAATTGGTCTCTGTTTCATCTTCATTCTTGGGGATTATTATGAATGAATGGTTGGTTTTGTTTGGAGATGTTGGATGA | 546 | 42.49 | MSFLLCYSPFKPLPLAFFFLILLSFHFLPAISTDFLVGDSDGWSVPKPKEADKYNKWASHNRFNVDDTVHFKYEKDSVMMVTEEEYKQCVSPKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPMSPPQPSTVPPEEKNGAAHSKLVSVSSSFLGIIMNEWLVLFGDVG | 181 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 25137341 | 25138305 | + | MELO3C002068.2.1 | Cme12g01900 | 345117 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g01900 | 181 | CDD | OsENODL1_like | 33 | 134 | IPR041846 | - | |
| Cme12g01900 | 181 | PANTHER | BLUE COPPER PROTEIN | 16 | 162 | IPR039391 | GO:0009055 | |
| Cme12g01900 | 181 | ProSiteProfiles | Phytocyanin domain profile. | 33 | 135 | IPR003245 | GO:0009055 | |
| Cme12g01900 | 181 | Pfam | Plastocyanin-like domain | 50 | 127 | IPR003245 | GO:0009055 | |
| Cme12g01900 | 181 | Gene3D | - | 31 | 138 | IPR008972 | - | |
| Cme12g01900 | 181 | SUPERFAMILY | Cupredoxins | 32 | 134 | IPR008972 | - | |
| Cme12g01900 | 181 | PANTHER | EARLY NODULIN-LIKE PROTEIN 6 | 16 | 162 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g00375 | Cme-Chr5:2987651 | Cme12g01900 | Cme-Chr12:25137341 | 1.42E-25 | dispersed | |
| Cme09g00457 | Cme-Chr9:4395940 | Cme12g01900 | Cme-Chr12:25137341 | 8.38E-45 | dispersed | |
| Cme11g01216 | Cme-Chr11:18408529 | Cme12g01900 | Cme-Chr12:25137341 | 9.79E-26 | dispersed | |
| Cme12g01900 | Cme-Chr12:25137341 | Cme11g00759 | Cme-Chr11:9434380 | 1.01E-17 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g01900 | - | - | cmo:103495780 | 314.694 |