Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01901 ATGGTAGAATTGGATGAGAAAGTTCCCTCCTCATCTGAGGTTGAGGCAATGAACAAAAAGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACTGCTACGGATGAATCGGAACTTCAAAATTCAATGCAAGGCGGAGAAGAAGGGGAAGAAGATGGTGGAAGCAATGAACCGGAGGAGAAAGTGAAAAAAAATGAGATGAAGAAGAAGAGGAAGACGAAGACGAAAACAAAGGTGAAGGGCGAGTTGGAAGAAGAAGGGAACGATGATGTTAATGATGGCGAGGGTGAGGATGGCGTGGAAGCGGAGGGTGAGGAGGATGAGGAGGATGAGGATAAGAAAAATAAGGTTAAGACTGGTGGGTCAGGAATTATGAGTTCCGTTTCATTTGATTCGCTTGAATTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGTTTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAATTGGGAAAGATATTCTAGGAGCTGCAAGGACTGGATCCGGGAAAACTCTTGCTTTTCTTATACCAGCTGTGGAGTTGCTACATCACATTTGCTTTACTCCTCGTAATGGAACCGGCGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTAGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTGGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTCAATCTATTAATAGCAACCCCTGGTCGTCTTCTCGACCATCTTCAGCACACCAAGAATTTTGTGTTCAAAAATCTGAAGTGCCTCATAATCGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAATCTTCTCCCAAAGAATAGGCAAACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTGGAAGATCTTGTTCGCTTGTCGTTTCAGTCAACTCCTATTTATATTGATGTGGACGATGGAAGAACAAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGCTCTAAGAGATTCATTCTTCTATATTCCTTCTTGAAGAAAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCATCTTGTAACTCTGTGAAATTCCATGCGGACCTTCTTAGATATATTAAGGTCGAATGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCCAGACTGGTATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGATATACCTGCTGTCAGCCGTTTAGCTTACCATGTAATTCTCATTGATTCTCTATGCTCATTTCAAATGTCTCAGGATTGGATTGTGCAATACGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGTCGAACAGCTCGAGGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGAGCTTCAATTTCTTCGCTATCTGAAGGCAGCAAAAGTTCCAGTCAAAGAGTATGAGTTCAGCGATAAGAAACTGGCCAACGTGCAATCTCATCTGGAGAAACTGGTTGGGAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTATAGATCCTATATATTAGCTTACAATTCACACTCAATGAAAGATATTTTCAATGTCCACCGCCTTGATCTGCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCGAAGGTGAACCTTAACATTGACAGCAGTGCCTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGCGTCAACAACAGATTCAATAAGAGCAAGAAAGAGGGAGATGACAGACAATTCGTAAGATACTAA 1896 42.3 MVELDEKVPSSSEVEAMNKKRKRKRPKKNLPSTATDESELQNSMQGGEEGEEDGGSNEPEEKVKKNEMKKKRKTKTKTKVKGELEEEGNDDVNDGEGEDGVEAEGEEDEEDEDKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQARAIPPSLIGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSGRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIINLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKKNLSKKVMVFFSSCNSVKFHADLLRYIKVECMDIHGKQKQQKRTSTFFSFIKAQTGILLCTDVAARGLDIPAVSRLAYHVILIDSLCSFQMSQDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEELQFLRYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGVNNRFNKSKKEGDDRQFVRY 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25138729 25143315 - MELO3C002067.2.1 Cme12g01901 345118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01901 631 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Cme12g01901 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 335 IPR014001 -
Cme12g01901 631 CDD DEADc_DDX18 140 337 IPR044773 GO:0003724|GO:0005524
Cme12g01901 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 505 IPR027417 -
Cme12g01901 631 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Cme12g01901 631 Pfam Helicase conserved C-terminal domain 366 489 IPR001650 -
Cme12g01901 631 Pfam Domain of unknown function (DUF4217) 531 591 IPR025313 -
Cme12g01901 631 Gene3D - 105 341 IPR027417 -
Cme12g01901 631 MobiDBLite consensus disorder prediction 87 111 - -
Cme12g01901 631 MobiDBLite consensus disorder prediction 1 19 - -
Cme12g01901 631 Gene3D - 346 615 IPR027417 -
Cme12g01901 631 CDD SF2_C_DEAD 350 500 - -
Cme12g01901 631 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 96 445 - -
Cme12g01901 631 SMART DUF4217_3 530 593 IPR025313 -
Cme12g01901 631 SMART helicmild6 389 490 IPR001650 -
Cme12g01901 631 MobiDBLite consensus disorder prediction 1 122 - -
Cme12g01901 631 PANTHER RNA HELICASE 463 597 - -
Cme12g01901 631 PANTHER RNA HELICASE 96 445 - -
Cme12g01901 631 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 463 597 - -
Cme12g01901 631 Pfam DEAD/DEAH box helicase 153 324 IPR011545 GO:0003676|GO:0005524
Cme12g01901 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 336 IPR027417 -
Cme12g01901 631 SMART ultradead3 148 353 IPR014001 -
Cme12g01901 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 539 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01901 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101209673 1038.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01807 Cme-Chr2:24841520 Cme12g01901 Cme-Chr12:25138729 1.11E-08 dispersed
Cme12g01816 Cme-Chr12:24605977 Cme12g01901 Cme-Chr12:25138729 0 dispersed
Cme12g01901 Cme-Chr12:25138729 Cme04g00578 Cme-Chr4:5277901 1.45E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51