Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01904 ATGGAGTTTATCAAGTGTTCGGTGGGCGGTACTGCGTACGGTCGAGGAATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCTCAAAAATTAGGGGCCGACTATGCACGTCTTAGCGGCGAAAAAACATTCGTTAAGGGGTTCAATTTCAAGGACGAAAGAATCATGGATGGTAATTGGGTGAATGAGCCTCGAGCCAACGTAATACAGAAGTTCCTGCAGCTTCTGGCTATTTGCCATACCGCATTGCCCGAAATTGACGAGGAAACTGGAAATATATCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCGGCCAGAGAATTTGGTTTCGAGTTCTATGAAAGGACTCAGACAAGCATTTCATTACGGGAGTTCGATCCAACCTCAGCCAAAAAAGTTGAAAGATCATATCAGCTACTGGATGTTTTGGAGTTTAATAGCACAAGAAAACGGATGTCTGTGATTGTAAGAGATGCAAAGGGAAAACTACTCCTTCTTTGTAAAGGAGCTGACAGGTTGGCATTTAAAACAAGTGTAGCTCAACAAATAACTGATGCGAAAGCACTACTTACATCCTCGAGCGAAACCCCAGAAACATTGGCTTTGATAATTGATGGAAAGTCCCTCACCTACGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTCATATGCTGCAGATCTTCTCCTAAACAGAAAGCACAAGTTACCCAAATGGTTAAGGTTAAGACAGGCAGCACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTCGGAATGATACAAGAAGCGGATATCGGGATCGGTATTAGTGGTGTAGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATCGCACAGTTTCGATACTTGGAACGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTATTCTTCTTTGAGATGTATGCTTCATTCTCCGGCCAAGCTGTATATAATGACTGGTTCCTTTCACTGTATAACGTCTTCTTTACTTCTCTCCCTGTGATTGCATTGGGAGTGTTTGACCAAGACGTCTCATCCCGGTACTGTCTTAAGTTCTCACTTTTGTACCAAGAAGGTGTCCAAAATGTGTTATTTAGTTGGGTTAGAATTTTCGGATGGGTGTTCAATGGGCTACTCAGTTCTGTCATCATATTCTTCTTTTGTGTTGGGGCAATGGACCATCAAGCTTTCCGCAACAGCGGAGAGGTCGTCGGGTTGGAAATTCTTGGTGCCACCATGTACACTTGTGTTGTTTGGGTTGTCAACTGCCAAATGGCATTGTCCATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCGTTCTTTGGTACTTATTCCTCATGGCATATGGAGCTATAAACCCAACCATATCAACCACAGCATTTCAGGTATTCATTGAGGCCTGTGCCCCGGCACCATCGTTTTGGATGCTCACACTATTGGCTCTTGGAACTTCCCTCCTTCCATACTTCGTCTTTGCATCAATCCAAATGCGCTTCTTCCCAATGTATCATCAAATGATTCAATGGATAAAAGCTGATGGACAGTCGAACGATCCAGAATACTGTCAAGTAGTGAGACAAAGATCATTACGACACACAACCGTCGGTTACACAGCCCGGTTCGAAGCATCAAAACATTTTGAAGAATTTTCAGAAATTAAGAGTCATTAG 1806 43.36 MEFIKCSVGGTAYGRGITEVERALARRKESTLPQKLGADYARLSGEKTFVKGFNFKDERIMDGNWVNEPRANVIQKFLQLLAICHTALPEIDEETGNISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSAKKVERSYQLLDVLEFNSTRKRMSVIVRDAKGKLLLLCKGADRLAFKTSVAQQITDAKALLTSSSETPETLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQMVKVKTGSTTLAVGDGANDVGMIQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGQAVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFSLLYQEGVQNVLFSWVRIFGWVFNGLLSSVIIFFFCVGAMDHQAFRNSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIVLWYLFLMAYGAINPTISTTAFQVFIEACAPAPSFWMLTLLALGTSLLPYFVFASIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEFSEIKSH 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25160748 25164387 + MELO3C002065.2.1 Cme12g01904 345121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01904 601 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 183 591 - -
Cme12g01904 601 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 52 192 IPR023299 GO:0000166
Cme12g01904 601 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 234 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g01904 601 Gene3D - 213 313 IPR023214 -
Cme12g01904 601 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 183 591 - -
Cme12g01904 601 SUPERFAMILY HAD-like 224 323 IPR036412 -
Cme12g01904 601 Pfam Phospholipid-translocating P-type ATPase C-terminal 296 546 IPR032630 -
Cme12g01904 601 Gene3D - 38 212 IPR023299 GO:0000166
Cme12g01904 601 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 187 553 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme12g01904 601 Pfam Cation transport ATPase (P-type) 99 182 - -
Cme12g01904 601 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 185 - -
Cme12g01904 601 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 185 - -
Cme12g01904 601 SUPERFAMILY Calcium ATPase, transmembrane domain M 202 546 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00473 Cme-Chr10:2997439 Cme12g01904 Cme-Chr12:25160748 4.96E-49 dispersed
Cme12g01904 Cme-Chr12:25160748 Cme01g02742 Cme-Chr1:34598876 5.35E-06 dispersed
Cme12g01904 Cme-Chr12:25160748 Cme12g01906 Cme-Chr12:25173231 0 proximal
Cme10g00310 Cme-Chr10:2035551 Cme12g01904 Cme-Chr12:25160748 7.53E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01904 K01530 K14802 csv:101209427 823.157