Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01906 ATGGGGAGTGGTAGAAGAAGAAGGAAGCAACATTTCAGAAGGATTCACGCTTTCCCTTGTGGTAGAGCTTCATTCAAAGATGAACACTCTTTAATTGGAGGGCCAGGATTCTCAAGGGTAGTTTACTGTAACGATCCAGATAGTTTTGAGGCTAGTCTTCTTAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTGTTGCTTCATTCTTCCCCAAATCATTGTTTGAGCAATTCAGAAGGAGTGCCTTCATCAACCAAGATCAACATATGTACCATGAGGAAACTGATAAGCCAGCTCATGCCCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGACACCATTCTTTCCGATAAAACGGGTACACTGACATGCAATTCAATGGAGTTTATCAAGTGTTCGGTGGGTGGTACTGCATACGGGCGAGGAATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCCCAAAAATTAGGGGCCGACTATGCACGTCTTAGCGGCGAAAAAACATTCGTTAAGGGGTTCAATTTCAAGGACGAAAGAATCATGGATGGTAATTGGGTGAATGAGCCTCGAGCCAATGTAATACAGAAGTTCCTGCAGCTTCTGGCTATTTGCCATACTGCATTGCCCGAAATTGATGAGGAAACTGGAAAAATATCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCGGCCAGAGAATTTGGTTTCGAGTTCTATGAAAGGACTCAGACAAGCATTTCATTACGGGAGTTCGATCCGACCTCAGCCAAAAAAGTTGAAAGATCATATCAGCTACTGGATGTTTTGGAGTTTAATAGTACAAGGAAACGGATGTCTGTGATTGTAAGAGATGCAAAAGGAAAACTACTACTTCTTTGTAAAGGAGCTGACAGCGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAAACAAAGGTGCACATAAACGAGTATGCCGATGCTGGTTTAAGAACTTTGGTTCTAGCATATCGTGAGCTGAAAGAGGAGGAATTTAATGCATTTCATCAAGAGTTCATCAAAGCGAAAAACACAGCATTTAAAACAAGTGTAGCTCAACAAATAACTGATGCGAAAGCATTGCTTACATCCTCAAGCGAAACCCCAGAAACATTGGCTTTGATAATTGATGGAAAGTCCCTCACCTATGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTCATTTGCTGCAGATCTTCTCCTAAACAGAAAGCACTAGTTACCCAAATGGTTAAGGTTAAGACAGGCAACACCACTCTAGCAGTTGGTGATGGTGCAAACGATGTTGGAATGATCCAAGAAGCGGATATCGGGATCGGTATTAGTGGTGTAGAAGGGATGCAGGCGGTCATGTCAAGTGATATTGCAATCGCACAGTTCCGATACTTGGAGCGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTATTCTTCTTTGAGATGTATGCATCATTCTCCGGCCAAACTGTATACAACGACTGGTTCCTTTCTTTGTATAACGTCTTTTTTACTTCTCTCCCTGTGATTGCTTTGGGAGTGTTTGACCAAGACGTCTCATCCCGGTACTGTCTTAAGTTCTCACTTTTATACCAAGAAGGTGTCCAAAATGTGTTATTTAGTTGGGTTCGAATTTTCGGATGGGTGTTCAATGGGCTACTCAGTTCTGTCATCATATTCTTCTTTTGTGTTGGGGCAATGGACCATCAAGCTTTCCGCAACAGCGGAGAGGTCGTTGGGTTGGAAATTCTTGGTGCCACCATGTACACTTGTGTTGTTTGGGTTGTCAACTGCCAAATGGCATTGTCCATCAGTTACTTCACCTATATTCAACATCTCTTCATCTGGGGCAGCATCATTCTTTGGTATTTATTCCTCATGGCATATGGAGCTATAAACCCAGCCATATCCACCACAGCATTTCAGGTATTCATTGAGGCCTGCGCCCCGGCACCATCATTTTGGATCCTCACACTATTGGCTCTTGGAGCTTCCCTTCTTCCATACTTCGTCTTTTCATCGATCCAAATGCGATTCTTCCCAATGTATCATCAAATGATTCAATGGATAAAAGCTGACGGACAATCGAACGATCCAGAATACTGTCAGGTAGTGAGACAGAGGTCATTACGTCACACAACCGTCGGTTACACAGCTCGGTTCGAAGCATCAAAGCATTTTGAAGAATTCTCAGAAATCAAGAGTCACTAG 2364 42.51 MGSGRRRRKQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTVASFFPKSLFEQFRRSAFINQDQHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPQKLGADYARLSGEKTFVKGFNFKDERIMDGNWVNEPRANVIQKFLQLLAICHTALPEIDEETGKISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSAKKVERSYQLLDVLEFNSTRKRMSVIVRDAKGKLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKEEEFNAFHQEFIKAKNTAFKTSVAQQITDAKALLTSSSETPETLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTQMVKVKTGNTTLAVGDGANDVGMIQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGQTVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFSLLYQEGVQNVLFSWVRIFGWVFNGLLSSVIIFFFCVGAMDHQAFRNSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAINPAISTTAFQVFIEACAPAPSFWILTLLALGASLLPYFVFSSIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEFSEIKSH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25173231 25178287 + MELO3C002064.2.1 Cme12g01906 345123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01906 787 Gene3D - 162 395 IPR023299 GO:0000166
Cme12g01906 787 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 84 - -
Cme12g01906 787 Pfam Phospholipid-translocating P-type ATPase C-terminal 482 732 IPR032630 -
Cme12g01906 787 Pfam Cation transport ATPase (P-type) 227 317 - -
Cme12g01906 787 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 372 739 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme12g01906 787 PRINTS H+-transporting ATPase (proton pump) signature 454 470 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g01906 787 PRINTS H+-transporting ATPase (proton pump) signature 328 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g01906 787 Pfam Phospholipid-translocating ATPase N-terminal 41 85 IPR032631 -
Cme12g01906 787 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 83 368 - -
Cme12g01906 787 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 369 777 - -
Cme12g01906 787 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 83 368 - -
Cme12g01906 787 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 369 777 - -
Cme12g01906 787 ProSitePatterns E1-E2 ATPases phosphorylation site. 121 127 IPR018303 -
Cme12g01906 787 Gene3D - 413 501 IPR023214 -
Cme12g01906 787 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 84 - -
Cme12g01906 787 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 420 537 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme12g01906 787 SUPERFAMILY HAD-like 114 509 IPR036412 -
Cme12g01906 787 PRINTS P-type cation-transporting ATPase superfamily signature 454 473 - -
Cme12g01906 787 PRINTS P-type cation-transporting ATPase superfamily signature 119 133 - -
Cme12g01906 787 SUPERFAMILY Calcium ATPase, transmembrane domain M 97 732 IPR023298 -
Cme12g01906 787 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 190 353 IPR023299 GO:0000166
Cme12g01906 787 CDD P-type_ATPase_APLT_Dnf-like 83 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00310 Cme-Chr10:2035551 Cme12g01906 Cme-Chr12:25173231 1.20E-23 dispersed
Cme12g01904 Cme-Chr12:25160748 Cme12g01906 Cme-Chr12:25173231 0 proximal
Cme12g01905 Cme-Chr12:25161524 Cme12g01906 Cme-Chr12:25173231 3.47E-28 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01906 K01530 - nnu:104603129 993.416