Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01908 ATGGCGATGAAGATCCCCATCAGAGCTTCCTCCATTCCTAGACATCACCACCCAACTCCTTCACTTCCTTCTCCCTCTCACAGGTCCGATTCCAAGTCCCAATTCCGTCCCATCTCCGTTTCTTTACCGGCTTCCACTACTCTCTCTCTCTTAGCTCTTATTTCTTCTCCCTACGAAGCTAGGGCTCTCAACAAAGACCAAATCGTCTCATCTCTTAATGAAGTGGAGAAGACGTTTGATCAAGTTCAAGAAATGGGCTCGAATTTCTTTGATATTGCACAACAGGCTATTGAGTCTGCTAAAAATGTTTTGAAGCCGGGTGTTGATGCGGCGCTGCCGATAGTGAAGCAAGCTGGAGAAGAGGCGTTGAAGGTTGCTTCTCCAACTATTTCTGAGGCTTCAAAGAAAGCGCTAGAAGCACTTCAGGACTCTGGCATTGACACTGAACCTGTTCTTAGTGCTGCCAAGACAGTAGTAGGGGCAGCACAACAAACTGGTAAGGTCATTGAAGGTGCCAAGCCTATAGCTTCGTCGACTGTCGAGACGATCTCCACAACCGATCCTCTTGTAATTGCAGAAATTGCTGGAGTCTTAGTCTTGGCTTACCTGCTCTTTCCTCCAATTTGGTCTGCTATCTCCTTCAACTTTCGTGGCTACAAAGGGTTATTTAGTCTGACTAGTGATACATTGTGTTTAGGTGAACTCTCTCCTGCTCAAACACTCGATCTAATTTCATCAAGCAATTACTTTCTGATTGATATACGATCCGAGAAGGACAAGGATAAGTCTGGCATTCCTCGCCTTCCTTCAAGTGCGAAGAACCAATCGATTGCCATTCCTTTGGAAGAATTACCAAACAAGTTGCGAGGCATTGTCCGGAACGCAAAGAAACTAGAAGCTGAACTTTCGGCCATCAAGATTTCATACCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCGTACTCAGACTCAGCAAAAGCAGTTGCAAAAGCACTAACAAGCCTTGGCTTCAAGAACTCCTGGATTGTAACTGATGGGTTTTTAGGTAGCAAAGGTTGGTTACAAAGTCGGTTAGGAACAGATACGTACAAGTTCTCATTCGCAGAGATCCTTTCGCCATCCCGAGTCATCTCATCTGGAACCAAACGTTTCGGGACGACTTCATTGACATCTGCATCTGGTCAAAAATTGCTTCCTGGTACTGATTAA 1221 45.13 MAMKIPIRASSIPRHHHPTPSLPSPSHRSDSKSQFRPISVSLPASTTLSLLALISSPYEARALNKDQIVSSLNEVEKTFDQVQEMGSNFFDIAQQAIESAKNVLKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQDSGIDTEPVLSAAKTVVGAAQQTGKVIEGAKPIASSTVETISTTDPLVIAEIAGVLVLAYLLFPPIWSAISFNFRGYKGLFSLTSDTLCLGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQSIAIPLEELPNKLRGIVRNAKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTSLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVISSGTKRFGTTSLTSASGQKLLPGTD 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25178450 25182393 + MELO3C002063.2.1 Cme12g01908 345125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01908 406 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 7 404 IPR044690 GO:0009704|GO:0071277|GO:0090333
Cme12g01908 406 MobiDBLite consensus disorder prediction 1 35 - -
Cme12g01908 406 Coils Coil 281 301 - -
Cme12g01908 406 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 7 404 - -
Cme12g01908 406 ProSiteProfiles Rhodanese domain profile. 245 366 IPR001763 -
Cme12g01908 406 CDD RHOD 239 353 - -
Cme12g01908 406 Gene3D - 233 371 IPR036873 -
Cme12g01908 406 SMART rhod_4 235 363 IPR001763 -
Cme12g01908 406 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 234 353 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01908 - - - csv:101209180 694.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02174 Cme-Chr3:28786845 Cme12g01908 Cme-Chr12:25178450 2.98E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g01293 . 59 322 Sulfurtransferasese/Rhodanese AT1G79230 76.5 1.5e-120 429.5
Cme06g01293 . 59 324 Sulfurtransferasese/Rhodanese AT1G16460 74.4 2.1e-115 412.1
Cme12g01908 . 36 324 Sulfurtransferasese/Rhodanese AT5G23060 61.1 3.6e-82 302.0
Cme06g00108 . 1 442 Sulfurtransferasese/Rhodanese AT4G01050 53.0 4.0e-115 412.1
Cme12g00775 . 5 601 Sulfurtransferasese/Rhodanese AT1G09280 64.3 2.1e-224 775.4
Cme10g01270 . 3 329 Sulfurtransferasese/Rhodanese AT2G40760 61.6 7.6e-116 414.5
Cme04g02001 . 84 428 Sulfurtransferasese/Rhodanese AT1G17850 65.0 4.9e-141 498.0
Cme08g01733 . 41 218 Sulfurtransferasese/Rhodanese AT2G42220 69.1 7.1e-67 250.8
Cme02g02022 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 67.0 9.1e-112 400.2
Cme05g00202 . 67 259 Sulfurtransferasese/Rhodanese AT5G19370 61.1 1.8e-67 253.1
Cme06g02850 . 113 467 Sulfurtransferasese/Rhodanese AT5G55130 71.0 2.2e-147 518.8
Cme06g01169 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 2.3e-78 288.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32