Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01913 ATGGCGGACGATTCAACTAACTCCTTCGCGTCGTCCCCAGAAGATCGTTTAAAAGCCCTAATTTCTTGTCCTTCTGCGAGTGCCAAATCCGGTGACGAAAACGAATTACCTGAAGGTGGATTTGAAGAAAATCACCTGCTGATTGACGATAATCATTCTTCTATCTGTGTAATTTGCTTTTCGGATGATGGAAAAGCGGAGAGAGGCAAGCTTGATTCCTGTGACCATTATTTTTGCTTCGTCTGCATTATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGTAAGGGGAGGTTTACTGTTGTTCATAGAATTGCGAAGGATCCCTGTCGCCTCCGTGAACGAATTGTTAATATTCCTATGCGGAATCAGGACCAGTCGGCTTCTGGAAATGCTAGGATTAGGGATCCATATGCAGAGACGTGTTGTACTGTGTGCAAGGGAATGGAAGACGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTTTTGTGTCGGCCTTGGTGCTAATGTACCCGAAGGTGATTGGTTTTGCCATGACTGCACCATCTCCAGAGCTCAACACACCGATATTAAATTGGATACTAGTTTCAACAATCAAAATCAAACAACTACGGTTGAACCACGCATTGCTATTTCTGATATAGTAAAAGAATCAAGTTCCCAAACAGTTGGCATAACTTGCAGAGGAGCTCTTTTACATTCAAATCGTGAGTCACCTTCTATTGTCCCCAGTTCGAGAAGCAGTGTGGCCCAGAAATCTTTGCCTAGTCGTGGTGGTAAAGCTGCAGGAACAGGTGCAAGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATAGCTATATAAGGGCTTTACGTGATAACTGGGATGCTGTACGAAGGGGTTCGCTGAAGTTTCCTGCTAGCAGCTCATCCACATATTGTGGCAACAGTTCCAAACGAGATACTGGTGGTGCTGAACTAATAAACAAGCAAACAGATCAACCTCAAGCCATTAGCTTGCAGGCAACTGCATTACCCGAGTGTAATGGAAACTCTTATGATGTCGAGAAGGCATGGCGAATGATGGAAATTGCAAAGGCAAAGGCTATACGTGAGGGAGATCAAACCTTGAGACATCCTGTTAGTAGACAAATAACCACAAAAACAAAAGATTCTCACACAGCTAAAGGTCAGCAGTACAAAATCAAGAAGCCGGATGAGCCAGCCAAGCATAAGAAGGAAATGGGAAAACAAAGATTGCTCGAGTTGGACAAGCAATTGTGTCGTCCCGTAGCAAGTAAGAAGAATAAAGCTTCTGATGAGTTTTTTCCTACCAATTCATCCAGTAATGGAGAATTTCCCTTGGGTAAAATGGTCCAGACTTGTGGAGGTGATTTCCACTGTGAAAATAGAAGAAAGCCATCAAACAAAATAGTGGATGAAGTTTCATCATCCTCCACAATGACACAAGCCTCGGATAAACACCATCCCGCTCGTGAGGCTGGCAACGATGACGATGGGAAAAGTGAGATACGAACGCTGGTCAAAATCAATCTAAAACTCCTAAGCCAAGGCAAAAATTTGGGATATGAAAGGTACAAGGAAGTGTCAAGGCTAGCAACACACGCAATCATGGCAAGATGTGGTTTAGAACCCCCACCAAAACCGACCAAACAATACGTATCGTGCTCGGTTTGCAGACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCAACCCTGATGCCGGATTCTTGCAGAAAATGCTTCATGGGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAATGGTGGGTTCCTCTTCTTAG 1845 43.85 MADDSTNSFASSPEDRLKALISCPSASAKSGDENELPEGGFEENHLLIDDNHSSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIVNIPMRNQDQSASGNARIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVPEGDWFCHDCTISRAQHTDIKLDTSFNNQNQTTTVEPRIAISDIVKESSSQTVGITCRGALLHSNRESPSIVPSSRSSVAQKSLPSRGGKAAGTGARTSARTLHRCRNIHSYIRALRDNWDAVRRGSLKFPASSSSTYCGNSSKRDTGGAELINKQTDQPQAISLQATALPECNGNSYDVEKAWRMMEIAKAKAIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKKEMGKQRLLELDKQLCRPVASKKNKASDEFFPTNSSSNGEFPLGKMVQTCGGDFHCENRRKPSNKIVDEVSSSSTMTQASDKHHPAREAGNDDDGKSEIRTLVKINLKLLSQGKNLGYERYKEVSRLATHAIMARCGLEPPPKPTKQYVSCSVCRHTEEEIRKLHRSTLMPDSCRKCFMGFVKDVVNAIMLEKLMVGSSS 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25201193 25204380 + MELO3C002058.2.1 Cme12g01913 345130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01913 614 MobiDBLite consensus disorder prediction 495 509 - -
Cme12g01913 614 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 609 - -
Cme12g01913 614 SUPERFAMILY RING/U-box 51 105 - -
Cme12g01913 614 SMART ring_2 144 187 IPR001841 -
Cme12g01913 614 SMART ring_2 56 96 IPR001841 -
Cme12g01913 614 PANTHER F18C1.6 PROTEIN 8 609 - -
Cme12g01913 614 Pfam PHD-finger 144 188 IPR019787 -
Cme12g01913 614 SMART PHD_3 143 188 IPR001965 -
Cme12g01913 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 102 IPR013083 -
Cme12g01913 614 SUPERFAMILY FYVE/PHD zinc finger 133 190 IPR011011 -
Cme12g01913 614 Pfam Ring finger domain 56 97 IPR001841 -
Cme12g01913 614 MobiDBLite consensus disorder prediction 244 261 - -
Cme12g01913 614 ProSiteProfiles Zinc finger PHD-type profile. 141 190 IPR019787 -
Cme12g01913 614 MobiDBLite consensus disorder prediction 482 509 - -
Cme12g01913 614 MobiDBLite consensus disorder prediction 389 413 - -
Cme12g01913 614 MobiDBLite consensus disorder prediction 243 276 - -
Cme12g01913 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 194 IPR013083 -
Cme12g01913 614 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Cme12g01913 614 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01913 - - - cmo:103495032 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00050 Cme-Chr2:461139 Cme12g01913 Cme-Chr12:25201193 3.35E-37 dispersed
Cme06g01662 Cme-Chr6:18046170 Cme12g01913 Cme-Chr12:25201193 9.68E-09 dispersed
Cme09g01857 Cme-Chr9:22775447 Cme12g01913 Cme-Chr12:25201193 1.37E-12 dispersed
Cme12g01913 Cme-Chr12:25201193 Cme02g00583 Cme-Chr2:6444229 4.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42379 PF00628 PHD 5.70E-09 CL0390 Cme TR