Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01918 ATGGCGGCAACAACATCCCAGAAATTTTCGGCGGATTTTGTGATGGGTGGAGTTGCTGCTATTGTGGCCAAGACGGCAGCCGCACCCATTGAAAGGGTCAAGCTTTTGTTGCAGAATCAGGGGGAGATGATAAAGAGAGGTCATCTTAAAAACCCATATCTCGGAATTCATCACTGTTTCAGAACTGTTCTCAAAGAAGAAGGCTTTTTGTCTCTATGGAGGGGAAATCAGGTTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAAACTATATTTGGGCGCTCGAAAGAGAAGGATGGATACGTCAAGTGGTTTGCTGGAAATGTGGCATCAGGAAGTGCTGCAGGAGCAACTACATCTTTGTTTCTGTATCATTTGGATTACGCACGCACTCGGCTTGGCACCGATGCAAAGGGCGGTGGTGTTAACAGTCAGCACCAGTTTAAAGGGATCTTTGATGTGTACAGAAAAACATTGTCAAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGCGTTTCGATCGTTGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAACCTCTTGTTCTGGTTGGACAGTTTGAGGGGAACTTTTTTGCTAGCTTCTTACTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCTGGACAAACCATGAAGTATCGTAGTGGTTTGCATGCATTTTCTGAGATCATTCGTCATGAGGGCATTGCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCGGGGGCTGGCGTTCTTGCAGGTTATGATCAATTGCACCGAATCGCATGTAGACATGGTTATTCCTTTGGAGGGCAACATCAAATAGCCTCAAAATGA 948 44.3 MAATTSQKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLKNPYLGIHHCFRTVLKEEGFLSLWRGNQVNVIRYFPTQAFNFAFKGYFKTIFGRSKEKDGYVKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKGGGVNSQHQFKGIFDVYRKTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQFEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTMKYRSGLHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHRIACRHGYSFGGQHQIASK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25227726 25230592 + MELO3C002052.2.1 Cme12g01918 345135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01918 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Cme12g01918 315 Pfam Mitochondrial carrier protein 213 298 IPR018108 -
Cme12g01918 315 Pfam Mitochondrial carrier protein 113 205 IPR018108 -
Cme12g01918 315 Pfam Mitochondrial carrier protein 8 103 IPR018108 -
Cme12g01918 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 204 IPR018108 -
Cme12g01918 315 Gene3D Mitochondrial carrier domain 2 304 IPR023395 -
Cme12g01918 315 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 4 309 - -
Cme12g01918 315 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 4 309 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 SUPERFAMILY Mitochondrial carrier 8 295 IPR023395 -
Cme12g01918 315 PRINTS Adenine nucleotide translocator signature 9 21 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 PRINTS Adenine nucleotide translocator signature 53 74 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 PRINTS Adenine nucleotide translocator signature 86 98 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 PRINTS Adenine nucleotide translocator signature 112 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 PRINTS Adenine nucleotide translocator signature 217 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Cme12g01918 315 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Cme12g01918 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 100 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02058 Cme-Chr3:28068958 Cme12g01918 Cme-Chr12:25227726 3.10E-75 dispersed
Cme03g02059 Cme-Chr3:28069243 Cme12g01918 Cme-Chr12:25227726 9.59E-28 dispersed
Cme03g02060 Cme-Chr3:28073563 Cme12g01918 Cme-Chr12:25227726 9.68E-135 dispersed
Cme03g02162 Cme-Chr3:28723456 Cme12g01918 Cme-Chr12:25227726 2.43E-52 dispersed
Cme12g01918 Cme-Chr12:25227726 Cme06g00138 Cme-Chr6:842810 2.20E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01918 K05863 - csv:101207715 588.186