Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01920 ATGGGGAGAGGGAGAGTGCAATTGAAGAGAATAGAGAACAAAATTAATAGACAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCCACCAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTGAAATGAATATGAGTCAGAATTTGAATTTTCATTTCAGCATGGAGAAAATTCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAGCCAATCAAATGGAAATTGGACACTTGAGCATGCAAAGCTTAAAGCCAGAATAGAGGTTTTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTGGACTCATTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTACAGAGCTACAGAAAAAGGGCAAAGTACTACAAGAGCATAACAACATGTTAGGCAAGAAGATAAAGGAGAAGGAGAAATCACGAGCTCACAATCCACTAATGGAGCAGCAGCAGCAGCAGGATAGTAATGCCATTGAGTCTTCTCCACTTCTTCTACCTCAACCATTTCAATCTCTCAGCATGAGTTGTCCTTATACAACCCACGTCCCCGAGGAGAACGACTCCACTGTCAATCACGACAGATCCGATACCCTCCTCCCGCCGTGGATGCTCCGCCACCACCTTGGTGACTAA 786 41.48 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCEMNMSQNLNFHFSMEKILERYERYSYAERRLVANDSQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESITELQKKGKVLQEHNNMLGKKIKEKEKSRAHNPLMEQQQQQDSNAIESSPLLLPQPFQSLSMSCPYTTHVPEENDSTVNHDRSDTLLPPWMLRHHLGD 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25234067 25239499 - MELO3C002050.2.1 Cme12g01920 345137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01920 261 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Cme12g01920 261 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 CDD MADS_MEF2_like 2 89 IPR033896 GO:0000977|GO:0045944
Cme12g01920 261 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 230 - -
Cme12g01920 261 Coils Coil 135 158 - -
Cme12g01920 261 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Cme12g01920 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Cme12g01920 261 MobiDBLite consensus disorder prediction 227 246 - -
Cme12g01920 261 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01920 261 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 Pfam K-box region 97 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01920 261 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme12g01920 261 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01462 Cme-Chr3:23903289 Cme12g01920 Cme-Chr12:25234067 3.07E-78 dispersed
Cme07g01023 Cme-Chr7:11749033 Cme12g01920 Cme-Chr12:25234067 3.24E-87 dispersed
Cme12g01920 Cme-Chr12:25234067 Cme12g01921 Cme-Chr12:25243840 1.90E-50 tandem
Cme12g01920 Cme-Chr12:25234067 Cme03g01461 Cme-Chr3:23893794 1.17E-56 wgd
Cme12g01920 Cme-Chr12:25234067 Cme07g01021 Cme-Chr7:11591766 3.25E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42381 PF01486 K-box 1.30E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01920 K09264 K09260 csv:101207225 475.707