Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01921 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCAAAGAGAAGAAATGGTTTGCTTAAGAAGGCTTATGAACTCTCTGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGTAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACTAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATAATGAATGCTACCCATCAAGTAAGTGAGAATCAACCACAGAGCTTTGATGACTATCTGAATCTAAAAGCAACAGTTGAATTCATGCAACAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCACTGAATGCCCAAGAACTTGAGCAACTTGAACATCAACTGGAGACATCCTTGGAGCGCATTAGATCCACTAAGACACAAAGCCTACTTGCCCAACTCGCAGAACTTCAACAAAAGGAGCATATGCTTGTCGAGGACAATCGAGGATTAAAAAAGAAGCTGGAAGAAAGCAGTGCGCAAGTGGCGGTGGCAGCAGCTGCGGCATGGGGCTGGGAAGGCGGCGCCGGAGGAGGGCACAACATGGAGTATCCGAGCCGTGGTGTTGCTTCACAGTCGGATGCTTTCTTCCACCCCAGAATTCAACACACTCCCACTTTACAAATTGGGTACAATTCTATTGGCTCAATGGGATTGAATCATGTCGGATCTGATCCATCCCAAAATGTCAACAGTAATGCATTTCACCTTGGCTGGATGATTTAA 777 43.89 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGIMNATHQVSENQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAQELEQLEHQLETSLERIRSTKTQSLLAQLAELQQKEHMLVEDNRGLKKKLEESSAQVAVAAAAAWGWEGGAGGGHNMEYPSRGVASQSDAFFHPRIQHTPTLQIGYNSIGSMGLNHVGSDPSQNVNSNAFHLGWMI 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 25243840 25247807 - MELO3C002049.2.1 Cme12g01921 345138
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01921 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cme12g01921 258 Coils Coil 151 171 - -
Cme12g01921 258 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme12g01921 258 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01921 258 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01921 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 238 - -
Cme12g01921 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Cme12g01921 258 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Cme12g01921 258 Coils Coil 122 145 - -
Cme12g01921 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cme12g01921 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02324 Cme-Chr11:30303986 Cme12g01921 Cme-Chr12:25243840 1.39E-84 dispersed
Cme11g02532 Cme-Chr11:31767647 Cme12g01921 Cme-Chr12:25243840 1.99E-63 dispersed
Cme12g01921 Cme-Chr12:25243840 Cme12g01251 Cme-Chr12:20640594 6.89E-47 dispersed
Cme12g01920 Cme-Chr12:25234067 Cme12g01921 Cme-Chr12:25243840 1.90E-50 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42382 PF01486 K-box 4.40E-24 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01921 K09264 K09260 csv:101204197 423.32