Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01921 | ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCAAAGAGAAGAAATGGTTTGCTTAAGAAGGCTTATGAACTCTCTGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGTAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACTAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATAATGAATGCTACCCATCAAGTAAGTGAGAATCAACCACAGAGCTTTGATGACTATCTGAATCTAAAAGCAACAGTTGAATTCATGCAACAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCACTGAATGCCCAAGAACTTGAGCAACTTGAACATCAACTGGAGACATCCTTGGAGCGCATTAGATCCACTAAGACACAAAGCCTACTTGCCCAACTCGCAGAACTTCAACAAAAGGAGCATATGCTTGTCGAGGACAATCGAGGATTAAAAAAGAAGCTGGAAGAAAGCAGTGCGCAAGTGGCGGTGGCAGCAGCTGCGGCATGGGGCTGGGAAGGCGGCGCCGGAGGAGGGCACAACATGGAGTATCCGAGCCGTGGTGTTGCTTCACAGTCGGATGCTTTCTTCCACCCCAGAATTCAACACACTCCCACTTTACAAATTGGGTACAATTCTATTGGCTCAATGGGATTGAATCATGTCGGATCTGATCCATCCCAAAATGTCAACAGTAATGCATTTCACCTTGGCTGGATGATTTAA | 777 | 43.89 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGIMNATHQVSENQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAQELEQLEHQLETSLERIRSTKTQSLLAQLAELQQKEHMLVEDNRGLKKKLEESSAQVAVAAAAAWGWEGGAGGGHNMEYPSRGVASQSDAFFHPRIQHTPTLQIGYNSIGSMGLNHVGSDPSQNVNSNAFHLGWMI | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 25243840 | 25247807 | - | MELO3C002049.2.1 | Cme12g01921 | 345138 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01921 | 258 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | Coils | Coil | 151 | 171 | - | - | |
Cme12g01921 | 258 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cme12g01921 | 258 | Pfam | K-box region | 89 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme12g01921 | 258 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme12g01921 | 258 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 238 | - | - | |
Cme12g01921 | 258 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 238 | - | - | |
Cme12g01921 | 258 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | Coils | Coil | 122 | 145 | - | - | |
Cme12g01921 | 258 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01921 | 258 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g02324 | Cme-Chr11:30303986 | Cme12g01921 | Cme-Chr12:25243840 | 1.39E-84 | dispersed | |
Cme11g02532 | Cme-Chr11:31767647 | Cme12g01921 | Cme-Chr12:25243840 | 1.99E-63 | dispersed | |
Cme12g01921 | Cme-Chr12:25243840 | Cme12g01251 | Cme-Chr12:20640594 | 6.89E-47 | dispersed | |
Cme12g01920 | Cme-Chr12:25234067 | Cme12g01921 | Cme-Chr12:25243840 | 1.90E-50 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42382 | PF01486 | K-box | 4.40E-24 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01921 | K09264 | K09260 | csv:101204197 | 423.32 |